From 31524a01c1d12ae1872e57c7cfb5bbc4bbd80da2 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 24 Nov 2025 02:10:16 +0000 Subject: [PATCH] Bump actions/checkout from 4 to 6 Bumps [actions/checkout](https://github.com/actions/checkout) from 4 to 6. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v4...v6) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/deploy_branch.yml | 2 +- .github/workflows/deploy_protected.yml | 2 +- .github/workflows/deploy_release.yml | 4 ++-- .github/workflows/test_benchmark_collection_models.yml | 4 ++-- .github/workflows/test_conda_install.yml | 2 +- .github/workflows/test_doc.yml | 4 ++-- .github/workflows/test_install.yml | 6 +++--- .github/workflows/test_performance.yml | 2 +- .github/workflows/test_petab_sciml.yml | 2 +- .github/workflows/test_petab_test_suite.yml | 4 ++-- .github/workflows/test_python_cplusplus.yml | 10 +++++----- .github/workflows/test_python_nogil.yml | 2 +- .github/workflows/test_python_ver_matrix.yml | 2 +- .github/workflows/test_sbml_semantic_test_suite.yml | 2 +- .../workflows/test_sbml_semantic_test_suite_jax.yml | 2 +- .github/workflows/test_valgrind.yml | 6 +++--- .github/workflows/test_windows.yml | 2 +- 17 files changed, 29 insertions(+), 29 deletions(-) diff --git a/.github/workflows/deploy_branch.yml b/.github/workflows/deploy_branch.yml index 3f8f75be52..f4846e7c53 100644 --- a/.github/workflows/deploy_branch.yml +++ b/.github/workflows/deploy_branch.yml @@ -17,7 +17,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 20 diff --git a/.github/workflows/deploy_protected.yml b/.github/workflows/deploy_protected.yml index b88c17a143..7402604de8 100644 --- a/.github/workflows/deploy_protected.yml +++ b/.github/workflows/deploy_protected.yml @@ -41,7 +41,7 @@ jobs: uses: actions/setup-python@v6 with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - run: git archive -o container/amici.tar.gz --format=tar.gz HEAD - name: Set up QEMU uses: docker/setup-qemu-action@v3 diff --git a/.github/workflows/deploy_release.yml b/.github/workflows/deploy_release.yml index 95cd047ef3..675e61cd54 100644 --- a/.github/workflows/deploy_release.yml +++ b/.github/workflows/deploy_release.yml @@ -27,7 +27,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 20 @@ -76,7 +76,7 @@ jobs: uses: actions/setup-python@v6 with: python-version: "3.11" - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - run: git archive -o container/amici.tar.gz --format=tar.gz HEAD - name: Set up QEMU uses: docker/setup-qemu-action@v3 diff --git a/.github/workflows/test_benchmark_collection_models.yml b/.github/workflows/test_benchmark_collection_models.yml index 652b7e740b..a6a868dbf8 100644 --- a/.github/workflows/test_benchmark_collection_models.yml +++ b/.github/workflows/test_benchmark_collection_models.yml @@ -31,7 +31,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 20 @@ -108,7 +108,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 20 diff --git a/.github/workflows/test_conda_install.yml b/.github/workflows/test_conda_install.yml index 9a1db741f5..6367214c2f 100644 --- a/.github/workflows/test_conda_install.yml +++ b/.github/workflows/test_conda_install.yml @@ -17,7 +17,7 @@ jobs: python-version: ['3.11', '3.12', '3.13'] runs-on: ${{ matrix.os }} steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v6 - name: Set up Miniconda uses: conda-incubator/setup-miniconda@v3 with: diff --git a/.github/workflows/test_doc.yml b/.github/workflows/test_doc.yml index 8a66c05861..d5e162473c 100644 --- a/.github/workflows/test_doc.yml +++ b/.github/workflows/test_doc.yml @@ -27,7 +27,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - run: git fetch --prune --unshallow - name: Set up doxygen @@ -50,7 +50,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - run: git fetch --prune --unshallow - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV diff --git a/.github/workflows/test_install.yml b/.github/workflows/test_install.yml index bc3d1200fb..45d527bf82 100644 --- a/.github/workflows/test_install.yml +++ b/.github/workflows/test_install.yml @@ -19,7 +19,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - run: git fetch --prune --unshallow - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV @@ -60,7 +60,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - run: git fetch --prune --unshallow - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV @@ -93,7 +93,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - run: git fetch --prune --unshallow - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV diff --git a/.github/workflows/test_performance.yml b/.github/workflows/test_performance.yml index 7439a9bf26..1a3c872a22 100644 --- a/.github/workflows/test_performance.yml +++ b/.github/workflows/test_performance.yml @@ -22,7 +22,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 20 diff --git a/.github/workflows/test_petab_sciml.yml b/.github/workflows/test_petab_sciml.yml index 720015a321..30d646fece 100644 --- a/.github/workflows/test_petab_sciml.yml +++ b/.github/workflows/test_petab_sciml.yml @@ -29,7 +29,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 20 diff --git a/.github/workflows/test_petab_test_suite.yml b/.github/workflows/test_petab_test_suite.yml index 0c305876fc..3d86715996 100644 --- a/.github/workflows/test_petab_test_suite.yml +++ b/.github/workflows/test_petab_test_suite.yml @@ -29,7 +29,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 20 @@ -136,7 +136,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v4 + - uses: actions/checkout@v6 with: fetch-depth: 20 diff --git a/.github/workflows/test_python_cplusplus.yml b/.github/workflows/test_python_cplusplus.yml index 799ffbbdc2..d5ddaf5221 100644 --- a/.github/workflows/test_python_cplusplus.yml +++ b/.github/workflows/test_python_cplusplus.yml @@ -32,7 +32,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: lfs: true - run: git fetch --prune --unshallow @@ -143,7 +143,7 @@ jobs: ~/.cache/pooch key: ${{ runner.os }}-py${{ matrix.python-version }}-${{ github.job }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - run: git fetch --prune --unshallow - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV @@ -228,7 +228,7 @@ jobs: ~/.cache/pooch key: ${{ runner.os }}-py${{ matrix.python-version }}-${{ github.job }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - run: git fetch --prune --unshallow - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV @@ -259,7 +259,7 @@ jobs: with: python-version: "3.11" - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: lfs: true @@ -326,7 +326,7 @@ jobs: with: python-version: "3.11" - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: lfs: true - run: git fetch --prune --unshallow diff --git a/.github/workflows/test_python_nogil.yml b/.github/workflows/test_python_nogil.yml index e04f3b2c44..2ddb0b429b 100644 --- a/.github/workflows/test_python_nogil.yml +++ b/.github/workflows/test_python_nogil.yml @@ -20,7 +20,7 @@ jobs: with: python-version: '3.13' freethreaded: true - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 20 - name: Install apt dependencies diff --git a/.github/workflows/test_python_ver_matrix.yml b/.github/workflows/test_python_ver_matrix.yml index 3f665031be..2777f0ed85 100644 --- a/.github/workflows/test_python_ver_matrix.yml +++ b/.github/workflows/test_python_ver_matrix.yml @@ -37,7 +37,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 20 lfs: true diff --git a/.github/workflows/test_sbml_semantic_test_suite.yml b/.github/workflows/test_sbml_semantic_test_suite.yml index 891ddb91d4..29b00ea929 100644 --- a/.github/workflows/test_sbml_semantic_test_suite.yml +++ b/.github/workflows/test_sbml_semantic_test_suite.yml @@ -36,7 +36,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 1 diff --git a/.github/workflows/test_sbml_semantic_test_suite_jax.yml b/.github/workflows/test_sbml_semantic_test_suite_jax.yml index a7f95507c5..d9af9235ce 100644 --- a/.github/workflows/test_sbml_semantic_test_suite_jax.yml +++ b/.github/workflows/test_sbml_semantic_test_suite_jax.yml @@ -33,7 +33,7 @@ jobs: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: fetch-depth: 1 diff --git a/.github/workflows/test_valgrind.yml b/.github/workflows/test_valgrind.yml index 098fcce03f..e0e3c4dfc0 100644 --- a/.github/workflows/test_valgrind.yml +++ b/.github/workflows/test_valgrind.yml @@ -37,14 +37,14 @@ jobs: - name: Checkout code (scheduled) if: github.event_name == 'schedule' - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: main lfs: true - name: Checkout code (manual, push, pull request) if: github.event_name != 'schedule' - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: lfs: true @@ -89,7 +89,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: lfs: true - run: git fetch --prune --unshallow diff --git a/.github/workflows/test_windows.yml b/.github/workflows/test_windows.yml index 76487d1a38..fb7db0fc53 100644 --- a/.github/workflows/test_windows.yml +++ b/.github/workflows/test_windows.yml @@ -31,7 +31,7 @@ jobs: with: python-version: ${{ matrix.python-version }} - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 with: lfs: true - run: git fetch --prune --unshallow