From b6da5bb5f2fc3e9de4387b679417bb694b212eb9 Mon Sep 17 00:00:00 2001 From: Daniel Weindl Date: Wed, 25 Feb 2026 08:55:06 +0100 Subject: [PATCH 1/2] CI: Set random seed in flaky python/tests/test_jax.py::test_conversion See https://github.com/AMICI-dev/AMICI/actions/runs/22374653249/job/64761962839 --- python/tests/test_jax.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/python/tests/test_jax.py b/python/tests/test_jax.py index d20c8459f1..1447c38fb2 100644 --- a/python/tests/test_jax.py +++ b/python/tests/test_jax.py @@ -135,7 +135,7 @@ def _test_model(amici_module, jax_module, ts, p, k): amici_model.set_free_parameters(np.asarray(p, dtype=np.float64)) amici_model.set_fixed_parameters(np.asarray(k, dtype=np.float64)) - edata = ExpData(sol_amici_ref, 1.0, 1.0) + edata = ExpData(sol_amici_ref, 1.0, 1.0, 1) edata.free_parameters = amici_model.get_free_parameters() edata.fixed_parameters = amici_model.get_fixed_parameters() edata.pscale = amici_model.get_parameter_scale() From b899d5400f2ff19dd05be51b4ccdc632a0ee0f04 Mon Sep 17 00:00:00 2001 From: Daniel Weindl Date: Wed, 25 Feb 2026 09:53:06 +0100 Subject: [PATCH 2/2] test_likelihoods --- python/tests/test_sbml_import.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/python/tests/test_sbml_import.py b/python/tests/test_sbml_import.py index a8c1b951e8..774f0e9d78 100644 --- a/python/tests/test_sbml_import.py +++ b/python/tests/test_sbml_import.py @@ -558,10 +558,10 @@ def test_likelihoods(model_test_likelihoods): rdata = model.simulate(solver=solver) sigmas = rdata["y"].max(axis=0) * 0.05 - edata = ExpData(rdata, sigmas, []) + edata = ExpData(rdata, sigmas, [], 1) # just make all observables positive since some are logarithmic while min(edata.get_measurements()) < 0: - edata = ExpData(rdata, sigmas, []) + edata = ExpData(rdata, sigmas, [], 1) # and now run for real and also compute likelihood values rdata = model.simulate(solver=solver, edata=[edata])[0]