Use qlen and slen directly from the blastp report

[suryasaha]

GOanna/masterscript.sh

Line 113 in 0fe3637

##CALCULATE QUERY AND SUBJECT LENGTH COLUMNS AND ADD THEM TO OUTPUT 6

[suryasaha]

Was there a reason the qlen and slen was computed and not pulled directly from the blast report in

GOanna/masterscript.sh

Line 101 in 0fe3637

blast_formatter -archive $out.asn -out $out.tsv -outfmt '6 qseqid qstart qend sseqid sstart send evalue pident qcovs ppos gapopen gaps bitscore score'

[suryasaha]

Qlen and Slen is basically qry aligned length and sub aligned length

GOanna/masterscript.sh

Line 117 in 0fe3637

echo -e "Query_ID\tQuery_length\tQuery_start\tQuery_end\tSubject_ID\tSubject_length\tSubject_start\tSubject_end\tE_value\tPercent_ID\tQuery_coverage\tPercent_positive_ID\tGap_openings\tTotal_gaps\tBitscore\tRaw_score" | cat - tmp2.tsv > temp && mv temp $out.tsv