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COPY publication (id, title, authors, journal, pubyear, pubmedid, projectid, programs) FROM stdin;
3 Increased levels of galactose-deficient IgG in the sera of HCV infected individuals with fibrosis and cirrhosis Krakover J, Rodemich L, Comunale MA, Marrero JA, Long RE, Wang M, Block TM, Mehta AS, Philip R Journal of Virology 2007 18045939 \N \N
4 GP73, a resident Golgi glycoprotein, is a novel serum marker for Hepatocellular Carcinoma. Steel LF, Romano PR, Marrero JA., Fimmel CJ, Comunale MA, Lok AS and Block TM, Di Bisceglie A Journal of Hepatology 2005 16137783 \N \N
5 SELDI-TOF-MS Profiling of Serum for Detection of the Progression of Chronic Hepatitis C to Hepatocellular Carcinoma Schwegler EE, Marrero JA and Drake RR, Block TM, Adam BL, Cazares L, Steel LF, Semmes OJ, Johnson DA Hepatology 2005 15726646 \N \N
6 SELDI-TOF-MS Profiling of Serum for Detection of the Progression of Chronic Hepatitis C to Hepatocellular Carcinoma Marrero JA and Drake RR, Schwegler EE, Block TM, Semmes OJ, Johnson DA, Cazares L, Adam BL, Steel LF Hepatology 2005 15726646 \N \N
8 GP73, a resident Golgi glycoprotein, is a novel serum marker for Hepatocellular Carcinoma. Fimmel CJ, Di Bisceglie A, Comunale MA, Marrero JA., Romano PR, Steel LF, Lok AS and Block TM Journal of Hepatology 2005 16137783 \N \N
9 Prediction of PSA Recurrence in Men with 12 years Post-prostatectomy Follow-up. Isharwal S, Makarov DV, Partin AW, BS., Miller MC, Marlow C, Veltri RW Cancer Epidemiology, Biomarkers & Prevention 2008 N/A \N \N
10 Tracking humoral responses using self assembling protein microarrays KS Anderson, Niroshan Ramachandran, Wagner R. Montor, Sahar Sibani, Yanhui Hu, Eugenie Hainsworth, Tanya Logvinenko and Joshua LaBaer, Mariam Eljanne, Martin G. Sanda, Jacob V. Raphael, Marcin Pacek, Jessica Wong Proteomics 2008 21136799 \N \N
11 Identification of a specific vimentin isoform that induces an antibody response in pancreatic cancer Greenson JK, Hinderer R, Hong SH, Misek DE, Hanash SM, Logsdon DC, Giordano TJ, Wang H, Puravs E, Simeone DM, Brenner DE Biomarker Insights 2007 18769604 \N \N
12 The gene for the axonal cell adhesion molecule TAX-1 is amplified and aberrantly expressed in malignant gliomas Zhu XX, Blaivas M, and Hanash SM, Israel MA, Song S, Rickman DS, Tyagi R, Kurnit DM, Misek DE, Ross DA, Kish PE, Bobek MP Cancer Research 2001 11280781 \N \N
14 Occurrence of autoantibodies to annexin I, 14-3-3, theta and LAMR1 in pre-diagnostic lung cancer sera Brenner D, Barnett M, Pitteri SJ, Wang H, Qiu J, Goodman G, Pereira-Faca SR, Krasnoselsky, Thornquist M, Li L, Edelstein C, Feng Z, Hanash SM, Choi G, Omenn G, Randolph TW, AK Journal of Clinical Oncology 2008 18724547 \N \N
15 Standard Operating Procedures for Serum and Plasma Collection: Early Detection Research Network Consensus Statement Grizzle W, Brenner D, Rom W, Krueger K, Godwin A, Wang W, Tuck M, Stass S, Chan D, Sorbara L, Chia D, Sanda M J. Proteome Res. 2009 19072545 \N \N
16 A Novel Decapeptide that Binds Avidly and Delivers Radioisotope to Colon Cancer Cells. Kan T, Ito T, Olaru A, Hamilton JP, Abraham JM, Paun B, Cheng Y, Mori Y, Agarwal R, Yang J, Meltzer SJ., Jin Z, Sato F, David S PLoS ONE 2007 17912343 \N \N
18 Immobilization strategies for single-chain antibody microarrays. Seurynck-Servoss, Rodland, Kagan, D., K.D., J., S.L., Pefaur, K., H., Apiyo, and Zangar, Engelmann, Miller, S., Baird, Srivastava, R.C., C.L., N. Proteomics 2008 18452230 \N \N
19 The NF-kB pathway regulates cytochrome P450 3A4 protein stability. and Lu, R.C., Verma, Y., Zangar, Bollinger, N., S. Karin, N.J. Mol. Pharmacol. 2008 18334598 \N \N
20 Ras-driven transformation of human nestin-positive pancreatic epithelial cells Der CJ, Groehler AL, Lee KM, Khazak V, Campbell PM, Ouellette MM, Kim HJ Methods in Enzymology 2008 18374182 \N \N
22 Sparse logistic regression with Lp penalty for biomarker identification. Wang S, Sato F, Tan M, Liu Z, Tian G, Jiang F, Meltzer SJ Statistical Applics. Genet. Molec. Biol 2007 17402921 \N \N
23 CpG island methylator phenotype in ulcerative colitis-associated neoplasias Issa J-PJ., Meltzer SJ, Konishi K, Wang S, Shen L Gastroenterology 2007 17408633 \N \N
25 Proteomic analysis of lung adenocarcinoma: Identification of a highly expressed set of proteins in tumors Chen G, Gharib TG, Hanash SM and Beer DG, Giordano TJ, Shedden KA, Orringer MB, Taylor JM, Misek DE, Thomas DG, Kardia SL, Huang CC, Iannettoni MD Clinical Cancer Research 2002 12114434 \N \N
27 Inactivation of the MAL gene in breast cancer is a common event that predicts benefit from adjuvant chemotherapy Horne HN, Murphy SK, Lee PS, Olson JA, Marks JR, Alonso MA Molecular cancer research : MCR 2009 19208741 \N \N
29 Do serum biomarkers really measure breast cancer? Jesneck JL, Lo JY, Mukherjee S, Marks JR, Yurkovetsky Z, Lokshin AE, Clyde M BMC cancer 2009 19476629 \N \N
30 Methylation patterns in cell-free plasma DNA reflect removal of the primary tumor and drug treatment of breast cancer patients Melnikov AA, Liggett TE, Marks JR, Levenson VV International journal of cancer. Journal international du cancer 2011 20473856 \N \N
31 Microarray analysis of early stage serous ovarian cancers shows profiles predictive of favorable outcome Luo J, Dressman HK, Bernardini MQ, Secord AA, Boren T, Horne H, Murphy SK, Alonso MA, Clarke JP, Levine DA, Lancaster JM, Boyd J, Iversen ES, Barnett JC, Marks JR, Berchuck A Clinical cancer research : an official journal of the American Association for Cancer Research 2009 19318476 \N \N
32 Role of eotaxin-1 signaling in ovarian cancer Szczepanski MJ, Marrangoni AM, Nolen BM, Szajnik ME, Lokshin AE, Levina V, Cheng P, Marks JR, Gorelik E Clinical cancer research : an official journal of the American Association for Cancer Research 2009 19351767 \N \N
34 Sonic hedgehog paracrine signaling regulates metastasis and lymphangiogenesis in pancreatic cancer Hollingsworth MA, Bailey JM, Mohr AM Oncogene 2009 19633682 \N \N
35 Expression signatures of TP53 mutations in serous ovarian cancers Sfakianos GP, Berchuck A, Marks JR, Murphy SK, Secord AA, Lee PS, Barnett JC, Iversen E, Baba T, Bernardini MQ BMC cancer 2010 20504346 \N \N
37 Emerging roles of MUC4 in cancer: a novel target for diagnosis and therapy Batra SK, Singh AP, Chaturvedi P Cancer Research 2007 17234748 \N \N
38 Promoter Hypermethylation Profile of Kidney Cancer Uzzo, E., Ibanez, J.S. and Cairns, I., R.G., P, T. Al-Saleem, R.G. Polascik, T. Babb, Greenberg, Dulaimi Clinical Cancer Research 2004 15217927 \N \N
39 The Genetics of Renal Oncocytosis; A Possible Model for Neoplastic Progression Al-Saleem, T., E., Feder, R, P., J.R. and Uzzo, Cairns, M., Testa, Dulaimi Cancer Genetics and Cytogenetics 2004 15193438 \N \N
40 Detection of Bladder Cancer in Urine by a Tumor Suppressor Gene Hypermethylation Panel Dulaimi, Greenberg, T. and Cairns, Al-Saleem, Uzzo, E., R.G., R.E., P. Clinical Cancer Research 2004 15041703 \N \N
41 Promoter Hypermethylation of Tumor Suppressor Genes in Urine from Kidney Cancer Patients I., Ibanez, R.E. and Cairns, Greenberg, Krassenstein, Uzzo, Dulaimi, T., Al-Saleem, R., Battagli, P., E., C. Cancer Research 2003 14695183 \N \N
43 Identification of Novel Target Genes by an Epigenetic Reactivation Screen of Kidney Cancer T., P., Uzzo, Ibanez de Caceres, A.M., R.G. and Cairns, I.,Dulaimi, Hoffman, E., Al-Saleem Cancer Research 2006 16707423 \N \N
45 ProteinChips: the essential tools for proteomic biomarker discovery and future clinical diagnostics. Clarke W, Chan DW Clin Chem Lab Med 2005 16309362 \N \N
46 Identification of biomarkers for breast cancer in nipple aspiration and ductal lavage fluid Chan DW., Kuerer H, Zhao J, Khan SA, Lange J, Schilling E, Krishnamurthy S, Yu X, Sukumar S, Li J Clinical Cancer Research 2005 16322290 \N \N
47 Proteomic analysis of dunning prostate cancer cell lines with variable metastatic potential using SELDI-TOF Rosenzweig J.M., van Rootselaar C.L., Dalrymple S., Chan D.W., Mangold L.A., Veltri R.W, Partin A.W., Gretzer M.B. Prostate 2004 15264244 \N \N
48 Improving risk classification of critical illness with biomarkers: a simulation study Yealy DM, Cooke CR, Kerr K, Kahn JM and Pepe MS, Seymour CW, Wang Z, Angus DC, Rea TD Journal of Critical Care 2013 23566734 \N \N
50 Estimating improvement in prediction with matched case-control designs Bansal A, Pepe MS Lifetime Data Analysis 2013 23358916 \N \N
51 Testing for improvement in prediction model performance Pepe MS, Longton G, Wang Z, Kerr KF Statistics in Medicine 2013 23296397 \N \N
52 Estimating the ROC curve in biomarker studies that match controls to cases on covariates Seymour C, Pepe MS, Fan J Academic Radiology 2013 23601953 \N \N
53 Logistic Regression Analysis with Standardized Markers Huang Y, Pepe MS and Feng Z Annals of Applied Statistics 2013 24204441 \N \N
54 Divergent molecular mechanisms underlying the pleiotropic functions of macrophage inhibitory cytokine-1 in cancer Mimeault M, Batra SK Journal of cellular physiology 2010 20578239 \N \N
56 Mucins in the pathogenesis of breast cancer: implications in diagnosis, prognosis and therapy Jain M, Mukhopadhyay P, Lakshmanan I, Chakraborty S, Ponnusamy MP, Batra SK Biochimica et biophysica acta 2011 21277939 \N \N
58 Recent advances on the molecular mechanisms involved in the drug resistance of cancer cells and novel targeting therapies Batra SK, Mimeault M, Hauke R Clinical pharmacology and therapeutics 2008 17786164 \N \N
59 Dynamics of the immune reaction to pancreatic cancer from inception to invasion Tuveson DA, Clark CE, Mick R, Vonderheide RH, Hingorani SR, Combs C Cancer research 2007 17909062 \N \N
60 Lung cancer in women: role of estrogens Ganti AK, Chakraborty S, Batra SK, Marr A Expert review of respiratory medicine 2010 20658912 \N \N
61 MUC4 mucin-induced epithelial to mesenchymal transition: a novel mechanism for metastasis of human ovarian cancer cells Batra SK, Dey P, Ponnusamy MP, Chakraborty S, Jain M, Lakshmanan I, Das S Oncogene 2010 20697346 \N \N
62 Expression of intestinal MUC17 membrane-bound mucin in inflammatory and neoplastic diseases of the colon Niehans G, Senapati S, Batra SK, Chakraborty S, Sharma P, Das S, Kaur S, Ho SB Journal of clinical pathology 2010 20702471 \N \N
63 DNA methylation and histone H3-K9 modifications contribute to MUC17 expression Higashi M, Yamada N, Batra SK, Yonezawa S, Houjou I, Yokoyama S, Goto M, Kitamoto S Glycobiology 2011 20926598 \N \N
65 Distribution-free ROC analysis using binary regression techniques Alonzo TA, Pepe MS Biostatistics 2002 12933607 \N \N
66 Presence of simian virus 40 DNA sequences in human lymphomas Scheuemann R, Milchgrub S, Kroft S, Gazdar A, Reddy J, Feng Z, Xu Y, Shivapukar N, Harada K, KcKenna R Lancet 2002 11897287 \N \N
67 Combining several screening tests: optimality of the risk score Pepe MS, McIntosh MS Biometrics 2002 12230001 \N \N
68 Instabilotyping: Comprehensive Indentification of Frameshift Mutations Caused by Coding Region Microsatellite Instability Rashid A, Yin J, Langenberg P, Leggett BA, Simms L, Meltzer SJ, Mori Y, Young J, Stine OC, Kuehl PM Cancer Research 2001 11507051 \N \N
69 Nanotechnology in Early Cancer Detection. (NIST Workshop Report) Srinivas P, Barker PE, Srivastava S Laboratory Investigation 2002 12004006 \N \N
70 Comparison of Statistical Methods for Classification of Ovarian Cancer Using a Proteomics Dataset Wu B, Fishman DA, Zhao H, Abbott T, Mor G, Ward D, Stone K, McMurray W, Williams K Cancer Research 2006 N/A \N \N
71 Boosted Decision Tree Analysis of SELDI Mass Spectral Serum Profiles Discriminates Prostate Cancer from Non-Cancer Patients Yasui Y, Ward M, Qu Y, Semmes J, Wright G, Schellhammer P, Feng Z, Adam B, Cazares L Clinical Chemistry 2002 12324514 \N \N
73 Serum HE4 levels are less frequently elevated than CA125 in women with benign gynecologic disorders Miller MC, Lu KH, Steinhoff MM, Lambert-Messerlian G, Moore RG, Bast RC Jr., Skates SJ Am J Obstet Gynecol 2012 22284961 \N \N
74 Differential diagnosis of a pelvic mass: improved algorithms and novel biomarkers. Lokshin A, Bast RC Jr, Moore RG., Skates S Int J Gynecol Cancer 2012 22543921 \N \N
75 The new face of ovarian cancer modeling: better prospects for detection and treatment Karst AM, Drapkin R F1000 medicine reports 2011 22076125 \N \N
76 Rethinking ovarian cancer: recommendations for improving outcomes Kaye SB, Lord CJ, Lengyel E, Coukos G, Bowtell DD, Friedlander M, Nephew KP, McNeish IA, Stronach EA, Menon U, Vaughan S, Drapkin R, Oza AM, Berchuck A, Coward JI, Etemadmoghadam D, Brenton JD, Mills GB, Sood AK, Crum CC, Berek JS, Gabra H, Levine DA, Balkwill FR, Bast RC, Walczak H Nature reviews. Cancer 2011 21941283 \N \N
77 Ex vivo culture of primary human fallopian tube epithelial cells Levanon K, Fotheringham S, Drapkin R Journal of visualized experiments : JoVE 2011 21610668 \N \N
78 Nucleic acid programmable protein array a just-in-time multiplexed protein expression and purification platform LaBaer J, Qiu J Methods in enzymology 2011 21943897 \N \N
79 Serum antibodies to the HPV16 proteome as biomarkers for head and neck cancer D, Wong J, Anderson KS British Journal of Cancer 2011 21654689 \N \N
80 Multiplexed detection of antibodies using programmable bead arrays Anderson KS Methods in molecular biology (Clifton, N.J.) 2011 21370069 \N \N
81 Immunoprofiling using NAPPA protein microarrays LaBaer J, Sibani S Methods in Molecular Biology (Clifton, N.J.) 2011 21370064 \N \N
82 Quantitative GSTP1 hypermethylation in bodily fluids of patients with prostate cancer Lopes,C, Silva,C, Oliveira,J, Sidransky,D, Usadel,H, Henrique,R, Jeronimo,C Urology 2002 12475696 \N \N
83 MUC4 as a diagnostic marker in cancer Jain M, Batra SK, Chakraborty S, Sasson AR Expert Opinion on Medical Diagnostics 2008 N/A \N \N
84 GP73, a resident Golgi glycoprotein, is a novel serum marker for Hepatocellular Carcinoma. Marrero JA., Di Bisceglie A, Fimmel CJ, Comunale MA, Lok AS and Block TM, Steel LF, Romano PR Journal of Hepatology 2005 16137783 \N \N
124 MUC4, a multifunctional transmembrane glycoprotein, induces oncogenic transformation of NIH3T3 mouse fibroblast cells Bafna S, Meza JL, Singh AP, Eudy JD, Batra SK, Moniaux N Cancer Research 2008 19010895 \N \N
85 Use of targeted glycoproteomics to identify serum glycoproteins that correlate with liver cancer in woodchucks and people Comunale MA, Romano PR, Lowman M, Block TM, MattuT and Mehta AS, London WT, Dwek RA, Steel LF, Tennant BC, Evans AA, Fimmel C Proceedings of the National Academy of Sciences 2005 15642945 \N \N
86 RAGE in Lung Tumors. Franklin, W. A. American Journal of Respiratory and Critical Care Medicine 2007 17200506 \N \N
87 Patient response to the disclosure of BRCA mutation tests in hereditary breast-ovarian cancer families Karatoprakli P, Gong G, Lynch HT, Metcalfe K, Trowonou A, Lynch JF, Narod SA, Snyder C Cancer Genetics and Cytogenetics 2006 16527602 \N \N
88 Gastric cancer: New genetic developments Huntsman D, Grady W, Suriano G, Lynch HT Journal of Surgical Oncology 2005 15895459 \N \N
89 American founder mutation for Lynch syndrome/ Prevalence estimates and implications Fodde R, Lynch JF, Coronel S, Okimoto R, Clark MB, Hampel H, de la Chapelle A, Trowonou A, Lynch HT, Wagner A, Gong G, Hayanatzki GR, Fu Y-X Cancer 2006 16353207 \N \N
90 Phenotypic and genotypic heterogeneity in the Lynch syndrome: diagnostic, surveillance and management implications Lynch PM, Lynch J, Shaw TG, Lynch HT, Fodde R, de la Chapelle A, Gong G, Boland CR European Journal of Human Genetics 2006 16479259 \N \N
91 Tumor infiltrating lymphocytes (TILs): Lessons learned in 30 years of study Drescher KM, Lynch HT Clinical and Applied Immunology Reviews 2005 N/A \N \N
92 Proteomic approaches for cancer biomarker discovery in plasma Hanash S, Pitteri S Expert Review Proteomics 2007 17941811 \N \N
93 Phenotypic heterogeneity in multiple myeloma families Huiart L, Hogg D, Quinn-Laquer B, Sanger W, Wiernik PH, Tarantolo S, Sobol H, Lynch HT, Weisenburger D, Bergsagel KI, Watson P, Olopade OI Journal of Clinical Oncology 2005 15681516 \N \N
94 BRCA1 and pancreatic cancer: pedigree findings and their casual relationships Brand RE, Narod SA, Lynch JF, Silberstein J, Deters CA, Snyder CL, Villeneuve P, Martin H, Lynch HT Cancer Genetics and Cytogenetics 2005 15796958 \N \N
95 Innovative proteomic approaches for cancer biomarker discovery Faca V, Hanash S, Krasnoselsky A Biotechniques 2007 17907570 \N \N
97 Adjusting for covariates in studies of diagnostic, screening or prognostic markers: an old concept in a new setting Pepe MS, Gu W American Journal of Epidemiology 2008 18477651 \N \N
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254 SELDI-TOF-MS Profiling of Serum for Detection of the Progression of Chronic Hepatitis C to Hepatocellular Carcinoma Steel LF, Semmes OJ, Johnson DA, Block TM, Schwegler EE, Cazares L, Adam BL, Marrero JA and Drake RR Hepatology 2005 15726646 \N \N
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256 Transrenal DNA as a Diagnostic Tool: Important Technical Notes Su Y-H, Block TM, Tomei LD and Umansky S, Landt O, Botezatu I, Melkonyan H, Serdyuk O, Lichtenstein A, Wang M Annals of the New York Academy of Sciences 2004 15251944 \N \N
257 Human urine contains small, 150-250 nucleotide sized, soluble DNA derived from the circulation Su Y-H, Landt O, Syngal S and Block TM, Melkonyan H, Brenner DE, Wang M, Umansky S, Ng A Journal of Molecular Diagnostics 2004 15096565 \N \N
258 EU-USA pathology panel for uniform diagnosis in randomised controlled trials for HRCT screening in lung cancer. K. M. Kerr, B. Guldhammerskov, Thunnissen, W. A. Franklin, E. Brambilla, W. H. Westra, F. B., C. E. Comin, and D. B. Flieder. European Respiratory Journal 2006 16899486 \N \N
259 A phage with high affinity for hepatitis B surface antigen for detection of HBsAg Lu X, Weiss P and Block TM Journal of Virological Methods 2004 15109821 \N \N
260 Underestimation of chronic hepatitis B in the US London WT, Cohen C, Block J, Evans AA, Conti M and Block TM Journal of Viral Hepatitis 2008 18088239 \N \N
261 Identification of 14-3-3 theta as an antigen that induces a humoral response in lung cancer Misek, Puravs E, DE, Zhang Q, Tammemagi M, Pereira-Faca SR, Thornquist M, Goodman G, Qiu J, Hanash SM, Kuick R, Karsnoselsky AL, Caporaso N, Edelstein C, Landi MT, Hinderer R, Phanstiel D, Pfeiffer R, Barnett M, Brenner D Cancer Research 2007 18089831 \N \N
262 Detecting K-ras mutations from fecal occult blood test cards in multiphasic screening for colorectal cancer Brenner DE, Kislitsin D, Rennert HS, Rennert G, Lev Z Cancer Letters 2007 17349741 \N \N
263 A multiparametric panel for ovarian cancer diagnosis, prognosis and response to chemotherapy Katsaros D, Simon I, Kim N, Diamandis E, Scorilas A, Massobrio M, Zheng Y, Wolfert R, Li L, Feng Z, Longrais I, Shan S Clinical Cancer Research 2007 18056174 \N \N
264 A multiparametric panel for ovarian cancer diagnosis, prognosis and response to chemotherapy Simon I, Zheng Y, Kim N, Shan S, Diamandis E, Wolfert R, Massobrio M, Longrais I, Scorilas A, Li L, Katsaros D, Feng Z Clinical Cancer Research 2007 18056174 \N \N
265 A data-analytic strategy for protein-biomarker discovery: profiling of high-dimensional proteomic data for cancer detection Thompson ML, Feng Z, Thornquist M, Wright G Jr, Adam B-L, Potter JD, Qu Y, Yasui Y, Winget M, Pepe M Biostatistics 2003 12925511 \N \N
266 Partially supervised learning using an EM-boosting algorithm Adam B-L, Pepe M, Feng Z, Hsu L, Yasui Y Biometrics 2004 15032790 \N \N
267 An automated peak-identification / calibration procedure for high-dimensional protein measures from mass spectrometers Adam B-L, Winget M, Feng Z, Thornquist M, McLerran D, Yasui Y BioMed Central Genetics 2003 14615632 \N \N
268 Development of common data elements: the experience of and recommendations from the Early Detection Research Network Kincaid H, Baron J, Warzel D, Brenner D, Spitz M, Thornquist M, Winget M, Feng Z International Journal of Medical Informatics 2003 12706181 \N \N
269 Diagnostic Markers for Early Detection of Ovarian Cancer Azori M, Feng Z, Flores-Saaib R, Schwartz PE, Leiser A, Tenthorey J, Alvero AB, Visintin I, Yu H, Longton G, Ward DC, Mor G, Lai Y, Rutherford T International Journal of Cancer 2008 18258665 \N \N
270 Assessing prostate cancer risk: results from the Prostate Cancer Prevention Trial Thompson I, Tangen C, Chi C, Ankerst D, Feng Z, Lucia M, Parnes H, Coltman C, Goodman P Analytical Chemistry 2006 16622122 \N \N
271 Multiplexed analysis of glycan variation on native proteins captured by antibody arrays Haab BB, Bergsma D, LaRoche T, Chen S, Brand RE, Hamelinck D, Brenner D Nature Method 2007 17417647 \N \N
272 Identification of a specific vimentin isoform that induces an antibody response in pancreatic can Misek DE, Giordano TJ, Logsdon DC, Simeone DM, Hanash SM, Wang H, Greenson JK, Puravs E, Hinderer R, Brenner DE, Hong SH Biomarker Insights 2007 18769604 \N \N
273 Prediction of lung cancer using volatile biomarkers in breath Maxfield RA, Altorki N, Greenberg J, Munawar MI, Rom WN, Kloss, Rashid A, Pass HI, Phillips M, Cameron RB, Cataneo RN, R, Austin JH, Schmitt P. Cancer Biomark 2007 17522431 \N \N
274 Removal of high molecular weight DNA by carboxylated magnetic beads enhances the detection of mutated K-ras DNA in urine Wang X-H, Su Y-H, Brenner DE and Block TM, Wang M, Wang Z, Song J Annals of the New York Academy of Sciences 2008 18837929 \N \N
275 Age at first birth and the risk of breast cancer in BRCA1 and BRCA2 mutation carriers Lubinski J, Moller P, Klijn J, Kim-Sing C, Kotsopoulos J, Ghadirian P, Isaacs C, Foulkes WD, Lynch HT, Neuhausen SL, and 34 more authors Breast Cancer Research and Treatment 2007 17245541 \N \N
276 Hereditary nonpolyposis colorectal cancer (Lynch syndrome) in Argentina: report from a referral hospital register Vaccaro CA, Mocetti E, Roverano AV, Ojea-Quintana G, Bala S, Lynch HT, Mullen E, Bonadeo F, Benati ML, Clark MB, Rivello HG, Renkonen E, Redal MA, Lynch JF, Peltomaki P Diseases of the Colon & Rectum 2007 17846840 \N \N
278 Hereditary diffuse gastric cancer (HDGC): presentation of a family with a new mutation of the CDH1 gene Huntsman D, Kaurah P, Lynch H, Redal M, Vaccaro C, Van Domselaar F, Senz J, Van Domselaar R, Correa D Acta Gastroenterol Latinoam 2007 17955726 \N \N
280 Hereditary breast cancer: Part II. Management of hereditary breast cancer: implications of molecular genetics and pathology Silva E, Snyder C, Lynch JF, Lynch HT, Vranic S, Gatalica Z The Breast Journal 2008 18086271 \N \N
281 Hereditary breast cancer: Part I. Diagnosing hereditary breast cancer syndromes Snyder C, Lynch HT, Silva E, Lynch JF The Breast Journal 2008 18086272 \N \N
282 Familial adenomatous polyposis in children younger than age ten years: a multidisciplinary clinic experience Thorson AG, Tajouri T, Lynch HT, Tinley S, Attard TM, Peterson KD Diseases of the Colon & Rectum 2008 18157572 \N \N
283 Frequency of the CHEK2 1100delC mutation among women with breast cancer: an international study Robidoux A, Trudeau M, Zhang S, Poll A, Gomes M, Zhang P, Hamel N, Liede A, Costa MM, Sun P, Horsman D, McCready D, Narod SA, Foulkes W, Rousseau F, Phelan CM, De Matsuda ML, Lynch H, Ghadirian P, Aziz Z Cancer Research 2008 18381420 \N \N
284 Hereditary diffuse gastric cancer: diagnosis, genetic counseling, and prophylactic total gastrectomy Weissman S, Wiyrick S, Lynch JF, rubinstein WS, Wirtzfeld D, Huntsman DG, Grady W, Senz J, Kaurah P, Lynch HT Cancer 2008 18442100 \N \N
285 Nanotechnology in early cancer detection Barker PE, Srivastava S, Srinivas P Laboratory Investigation 2002 12004006 \N \N
286 High-throughput TRAP/PCR analysis of telomerase using capillary electrophoresis Hess JL, Sanow AD, Miller K, Highsmith WE, Wang W, Srivastava S, Atha DH, Wu OC, Xu J American Journal of Human Genetics 2002 N/A \N \N
287 NIST physical standards for DNA-based medical testing. Ticehurst JR, Watson MS, Barker PE, O’Connell CD, Colbert JC Journal of Clinical Laboratory Analysis 2001 11835524 \N \N
289 Dynamic alteration of soluble serum biomarkers in healthy aging Chatta GS, Yurkovetsky ZR, Shurin GV, Lokshin AE, Tourkova IL, Shurin MR Cytokine 2007 17689975 \N \N
290 Biomarker approaches to the development of cancer screening tests: can cancer blood tests become a routine health check-up? Yurkovetsky Z, Lokshin A, Linkov F Future Oncology 2007 17547524 \N \N
291 Early detection and staging of adenocarcinoma of the pancreas Pappas S, Federle MP, Zeh HJ 3rd, Lokshin AE Gastroenterology Clinics of North America 2007 17533087 \N \N
292 Development of multimarker panel for early detection of endometrial cancer. High diagnostic power of prolactin Winans M, Linkov F, Velikokhatnaya L, Gorelik A, Rand A, Marrangoni A, Maxwell GL, Yurkovetsky Z, Ta'asan S, Lokshin A, Skates S, Lomakin A, Lu K Gynecologic Oncology 2007 17659325 \N \N
293 Low-dose Paclitaxel prior to intratumoral dendritic cell vaccine modulates intratumoral cytokine network and lung cancer growth Han B, Zhong H, Lokshin A, Shurin GV, Shurin MR, Tourkova IK, Rosenbloom A Clinical Cancer Research 2007 17875775 \N \N
294 Use of high density antibody arrays to validate and discover cancer serum biomarkers Ramirez AB, Loch CM, Delrow JJ, Lampe PD, McIntosh MW, Urban ND, Garvik BM, Liu Y, Scholler N, Sather CL Molecular oncology 2007 19383305 \N \N
295 Use of a single-chain antibody library for ovarian cancer biomarker discovery Labaer J, Loch CM, Lampe PD, Eugene R, Zhang Y, Ramirez AB, Mendoza EA, Wayner EA, Hainsworth E, Sargent JE, Sibani S, Liu Y, Wang X, Urban ND, McIntosh MW Molecular & cellular proteomics : MCP 2010 20467042 \N \N
296 Creatine kinase brain overexpression protects colorectal cells from various metabolic and non-metabolic stresses. Rajagopalan K, Kulkarni P, Mooney SM, Getzenberg RH., Zeng Y, Williams BH, Christudass CS, Yin B, Li Y J Cell Biochem 2011 21308735 \N \N
297 Missed adenomas during colonoscopic surveillance in individuals with Lynch Syndrome (hereditary nonpolyposis colorectal cancer). Marcon NE, Zhao L, Turgeon DK, Tuck MK, Normolle DP, Brenner DE, Bresalier RS, Syngal S, Stockwell DH, Stoffel EM, Baron JA, Ruffin MT Cancer research Prevention 2008 19138994 \N \N
298 Chromoendoscopy detects more adenomas than colonoscopy using intensive inspection without dye spraying. Turgeon DK, Marcon NE, Normolle DP, Brenner DE, Bresalier RS, Stockwell DH, Syngal S, Stoffel EM, Baron JA, Ruffin MT, Arber N, Tuck MK Cancer Prevention Research 2008 19139000 \N \N
299 Plasma glycoprotein profiling for colorectal cancer biomarker identification by lectin glycoarray and lectin blot Qiu Y, Bresalier R, Patwa TH, Brenner DE, Synal S, Lubman DM, Marcon N, Xu L, Tuck M, Jin G, Shedden K, Misek DE, Turgeon DK, Ruffin MT Journal of proteome research 2008 18311904 \N \N
302 Colorectal cancer molecular biology moves into clinical practice Pritchard CC, Grady WM Gut 2011 20921207 \N \N
303 Linking epidemiology to epigenomics--where are we today? Ulrich CM, Grady WM Cancer prevention research (Philadelphia, Pa.) 2010 21149325 \N \N
304 Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression. Wei JT, Monzon FA, Rubin MA, Becich MJ, Chandran U, Laxman B, Pienta KJ, Yu J, Shah RB, Tomlins SA, Varambally S, Mehra R, Chinnaiyan AM., Rhodes DR, Ghosh D Cancer Cell 2005 16286247 \N \N
305 Physiological and molecular effects of Apo2L/TRAIL and cisplatin in ovarian carcinoma cell lines Lokshin A, Edwards RP, Marrangoni AM, Feng X, Naoumova N, Winans M, Siervo-Sassi RR Cancer Letters 2003 12536078 \N \N
307 Classification and selection of biomarkers in genomic data using LASSO. Ghosh D, Chinnaiyan AM. J Biomed biotechnol 2005 16046820 \N \N
308 Is the monocyte chemotactic protein-1 -2518 G allele a risk factor for severe acute pancreatitis? Whitcomb DC, Lokshin A, Sass DA, Papachristou GI, Avula H, Lamb J, Barmada MM, Slivka A Clinical Gastroenterology and Hepatology 2005 15880317 \N \N
309 IL-12 receptor-mediated upregulation of FasL in human ovarian carcinoma cells Edwards RP, Lokshin AE, Drenning SD, Gorelik E, Grandis JR, Kwon JA, Feng X, Velikokhatnaya L, Marrangoni AM International Journal of Cancer 2004 15382042 \N \N
310 Cancer immunomics: using autoantibody signatures in the early detection of prostate cancer. Chinnaiyan AM., Bradford TJ, Wang X Urol Oncol 2006 16678056 \N \N
312 Expression of chemokines in GVHD target organs is influenced by conditioning and genetic factors and amplified by GVHR Luster A, Mapara MY, Bronson R, Leng C, Lokshin A, Kim YM, Sykes M Biology of Blood and Marrow Transplantation 2006 16737935 \N \N
313 New tumor markers: CA125 and beyond Baggerly KA, Jacobs I, Rosen D, Badgwell D, Atkinson EN, Lu K, Zhang Z, Lu Z, Skates S, Lokshin A, Liu J, Menon U, Bast RC Jr, Marquez R International Journal of Gynecological Cancer 2005 16343244 \N \N
314 Humoral immune response to alpha-methylacyl-CoA racemase and prostate cancer. Rubin MA, Chinnaiyan AM., Ghosh D, Laxman B, Harwood J, Rhodes DR, Bhagavathula S, Giacherio D, Sanda MG, Sreekumar A Journal of the National Cancer Institute 2004 15173267 \N \N
315 Identification of beta-tubulin isoforms as tumor antigens in neuroblastoma R, Geiger, DE, Prasannan, L, Michon, and Hanash, J, SM, Misek, JD, Hinderer Clinical Cancer Research 2000 11051243 \N \N
317 N-linked glycosylation of the liver cancer biomarker GP73 Philip R, Mehta AS and Block TM, D'Amelio A, Comunale MA, Pirog N, Norton P, Rodemich L, Krakover J Journal of Cellular Biochemistry 2008 18004786 \N \N
318 Increased levels of galactose-deficient anti-gal IgG in the sera of HCV infected individuals with fibrosis and cirrhosis Rodemich L, Comunale MA, Marrero JA and Block TM, Krakover J, Wang M, Long RE, Mehta AS, Philip R Journal of Virology 2008 18045939 \N \N
319 Fecal DNA biomarkers for the detection of colorectal neoplasia: Attractive, but is it feasible? (Editorial Comment) Rennert G, Brenner DE Journal of the National Cancer Institute 2005 16077063 \N \N
320 Symptomatology and health attitudes of chronic hepatitis B patients in the United States Fisher RT and Atillasoy E, Harris M, Han S-H, Block TM, Maa J-F, Hann H-W Journal of Viral Hepatitis 2008 18088244 \N \N
323 MicroRNAs as regulators of death receptors signaling. Croce CM, Condorelli GL, Garofalo M, Condorelli G. Cell Death and Differintiation 2010 19644509 \N \N
325 Aberrant Expression of Mucin Core Proteins and O-Linked Glycans Associated with Progression of Pancreatic Cancer Linde EM, DiMaio DJ, Remmers N, Anderson JM, Yu F, Wandall HH, Lazenby AJ, Mandel U, and Hollingsworth, Clausen H Clinical Cancer Research 2013 23446997 \N \N
327 MUC4 expression correlates with poor prognosis in small-sized lung adenocarcinoma Hirotsu Y, Tsutsumida H, Imai K, Kubota I, Goto M, Batra SK, Kitajima S, Wakimoto J, Yonezawa S Lung Cancer 2007 17126950 \N \N
328 Pulmonary prostacyclin synthase overexpression chemoprevents tobacco smoke lung carcinogenesis in mice Girod CE, Franklin WA, Sotto-Santiago S, Hudish TM, Miller YE, Keith RL, Geraci MW, Nemenoff RA, Nana-Sinkam SP, March TH Cancer Research 2004 15313935 \N \N
330 Discovering the route from inflammation to pancreatic cancer Momi N, Krishn SR, Kaur S, Batra SK Minerva gastroenterologica e dietologica 2012 23207606 \N \N
331 Early diagnosis of pancreatic cancer: challenges and new developments Kaur S, Jain M, Baine MJ, Sasson AR, Batra SK Biomarkers in medicine 2012 23075238 \N \N
333 Overexpression of ecdysoneless in pancreatic cancer and its role in oncogenesis by regulating glycolysis Gurumurthy CB, Band V, Rachagani S, Zhao X, Batra SK, Hollingsworth MA, Chakraborty S, Dey P, Anderson JM, Lele S, Singh PK Clinical Cancer Research 2012 22977192 \N \N
335 Nicotine/cigarette smoke promotes metastasis of pancreatic cancer through α7nAChR-mediated MUC4 upregulation Kaur S, Kunigal SS, Rachagani S, Ponnusamy MP, Batra SK, Ouellette MM, Momi N, Chellappan S Oncogene 2013 22614008 \N \N
336 Emergence of zebrafish models in oncology for validating novel anticancer drug targets and nanomaterials Mimeault M, Batra SK Drug discovery today 2013 22903142 \N \N
337 Bronchioloalveolar carcinoma: a model for investigating the biology of epidermal growth factor receptor inhibition Crowley J, Franklin WA, Chansky K, Davies AM, Gumerlock PH, West H, Lau DH, Gandara D, Hirsch FR Clinical Cancer Research 2004 15217959 \N \N
338 Lineage relationship of prostate cancer cells types based on gene expression Liu AY, Vencio EF, Denyer G, Ware CB, Vencio RZN, Vessella RL, Pascal LE BMC Medical Genomics 2011 21605402 \N \N
339 Premalignant evolution of lung cancer: Gilles F Filley lecture FranklinWA Chest 2004 15136432 \N \N
340 Embryonal carcinoma cell induction of miRNA and mRNA changes in co-cultured prostate stromal fibromuscular cells Zhang S., Vencio EF, Liu AY, Galas DJ, Pascal LE, Wang AJ, Ruohola-Baker H, Denyer G, Wang K, Page LS Journal of Cellular Physiology 2011 20945389 \N \N
341 Intersession reproducibility of mass spectrometry profiles and its effect on accuracy of multivariate classification models. Bigbee WL, Pelikan R, Hauskrecht M., Malehorn D, Lyons-Weiler J Bioinformatics 2007 17766268 \N \N
343 Epigenetic silencing of the intronic microRNA hsa-miR-342 and its host gene EVL in colorectal cancer Paraskeva C, Tewari M, Markowitz SD, Kroh EM, Willson JK, Allen A, Fritz BR, Tsuchiya KD, Kaz AM, Kim YH, Parkin RK, Grady WM, Washington MK, Mitchell PS, Lee JH Oncogene 2008 18264139 \N \N
344 TGF-beta receptor inactivation and mutant Kras induce intestinal neoplasms in mice via a beta-catenin-independent pathway Ulrich CM, Tsuchiya KD, Song X, Munoz NM, Grady WM, Trobridge P, Rojas A, Washington MK, Sasazuki T, Shirasawa S, Knoblaugh S Gastroenterology 2009 19208363 \N \N
345 Genomic and epigenetic instability in colorectal cancer pathogenesis Carethers JM, Grady WM Gastroenterology 2008 18773902 \N \N
346 The aberrant methylation of TSP1 suppresses TGF-beta1 activation in colorectal cancer Meherem S, Rojas A, Washington MK, Kim YH, Grady WM, Markowitz SD, Willis JE International journal of cancer. Journal international du cancer 2008 18425817 \N \N
347 TGF-beta has paradoxical and context dependent effects on proliferation and anoikis in human colorectal cancer cell lines Muñoz NM, Baek JY, Grady WM Growth factors (Chur, Switzerland) 2008 18651288 \N \N
348 Aberrant DNA methylation occurs in colon neoplasms arising in the azoxymethane colon cancer model Washington MK, Trobridge P, Henikoff S, Dzieciatkowski S, Borinstein SC, Grady WM, Conerly M, Biswas S Molecular carcinogenesis 2010 19777566 \N \N
349 TGF-beta receptor levels regulate the specificity of signaling pathway activation and biological effects of TGF-beta Rojas A, Cress D, Grady WM, Padidam M Biochimica et biophysica acta 2009 19339207 \N \N
351 Colorectal endoscopy, advanced adenomas, and sessile serrated polyps: implications for proximal colon cancer Zhu LC, Potter JD, Burnett-Hartman AN, Newcomb PA, Grady WM, Phipps AI, Passarelli MN, Upton MP The American journal of gastroenterology 2012 22688851 \N \N
353 Prevention and early detection of ovarian cancer: mission impossible? Chan D, Lu K, Lokshin A, Brewer M, Lu Z, Skates S, Hernandez MA, Daley M, Badgwell D, Mills GB, Zhang Z, Ozols R, Bast RC Jr, Zou C, Yu Y Recent Results in Cancer Research 2007 17302189 \N \N
354 DNA methylation profiling across the spectrum of HPV-associated anal squamous neoplasia Coppola D, Siegel EM, Qu X, Hernandez JM, Eschrich S, Shibata D, Ajidahun A, Berglund A, Grady WM, Giuliano AR, Riggs B, Elahi A PloS one 2012 23226306 \N \N
355 Genomic Aberrations Occurring in Subsets of Serrated Colorectal Lesions but not Conventional Adenomas Grady WM, Newcomb PA, Potter JD, Wurscher MA, Phipps AI, Passarelli MN, Zhu LC, Makar KW, Upton MP, Burnett-Hartman AN Cancer research 2013 23539450 \N \N
356 Inactivation of TGF-β signaling and loss of PTEN cooperate to induce colon cancer in vivo Wang Y, Knoblaugh S, Yu M, Trobridge P, Grady WM, Morris SM, Kanngurn S Oncogene 2013 23604118 \N \N
357 The early detection research network’s specimen reference sets: Paving the way for rapid evaluation of potential biomarkers Krueger K, Thompson I, Feng Z, Rinaudo JA, Srivastava S, Kagan J, Sorbara L, Patriotis C, Thornquist M, ZhengY, Pepe M, Huang Y, Dahlgren J Clinical Chemistry 2013 23193062 \N \N
360 Frequent IGF2/H19 domain epigenetic alterations and elevated IGF2 expression in epithelial ovarian cancer Spillman MA, Huang Z, Wen Y, Berchuck A, Simel LR, Murphy SK, Marks JR, Nichols TD, Whitaker RS Molecular Cancer Research 2006 16603642 \N \N
363 A migration signature and plasma biomarker panel for pancreatic adenocarcinoma Chen J, Balasenthil S, Chen N, Killary AM, Carter J, Frazier ML, Sen S, Grizzle WE, Lott ST Cancer Prevention Research (Philadelphia, PA) 2011 21071578 \N \N
366 Identification of osteopontin as a novel marker for early hepatocellular carcinoma Beretta L, Hainaut P, Marrero JA, Plymoth A, Sangrajrang S, Ge S, Feng Z, Rosen HR, Shang S Hepatology 2012 21953299 \N \N
367 Creatine kinase brain overexpression protects colorectal cells from various metabolic and non-metabolic stresses Zeng Y, Rajagopalan K, Li Y, Williams BH, Mooney SM, Christudass CS, Kulkarni P, Yin B, Getzenberg RH Journal of cellular biochemistry 2011 21308735 \N \N
369 Susceptibility locus for lung cancer at 15q25.1 is not associated with risk of pancreatic cancer Frazier ML, Sen S, Pande M, Killary AM, Amos CI, Chen J, Wu X Pancreas 2011 21697764 \N \N
371 Asymptotic Properties of the Sequential Empirical ROC, PPV and NPV Curves under Case-Control Sampling Koopmeiners J, Feng Z. Annuals of Statistics 2011 24039313 \N \N
373 Semi-parametric ROC analysis to evaluate biomarkers for disease Cai T, Pepe MS Journal of the American Statistical Association 2002 N/A \N \N
374 Molecular quality of exfoliated cervical cells: Implications for molecular epidemiology and biomarker discovery Unger ER, Verma M, Vernon SD, Lee DR, Habis AH Cancer Epidemiology, Biomarkers & Prevention 2004 15006929 \N \N
375 Impact of RNA extraction from limited samples on microarray results Evengard B, Vernon SD, Unger ER, Lee DR, Ojaniemi H BioTechniques 2003 14628670 \N \N
376 A simplified approach for analysis of SELDI-TOF mass spectrometry data Ding YS, Vernon SD, Unger ER, Karen KL Appl Genomics and Proteomics 2003 N/A \N \N
377 Bioelectronic DNA detection of human papillomaviruses using eSensor™: A model system for detection of multiple pathogens Unger ER, Chan V, Farkas DH, Miller DL, Vernon SD, Blackburn GF, Chen Y-P, Reeves WC BMC Infect Dis 2003 12814521 \N \N
378 Global amplification of sense RNA: A novel method to replicate and archive mRNA for gene expression analysis Unger ER, Verma M, Vernon SD, Rajeevan MS, Dimulescu IM Genomics 2003 13679029 \N \N
379 Serum protein profiles to identify head and neck cancer. Wright GL, Somers KD, Adam BL, Stack BC, Wadsworth JT, Cazares LH, Semmes OJ Clinical Cancer Research 2004 15014013 \N \N
380 miR15a and miR16-1 in Cancer: Discovery and Future Perspectives Croce CM, Aqeilan R, Calin GA Death and Differentiation 2010 19498445 \N \N
381 High prevalence of endobronchial malignancy in high-risk patients with moderate dysplasia in sputum Franklin W A, Merrick TA, Petty TL, Byers T, Cook R, Keith, Bunn PA Jr, Shroyer KR, Prindiville SA, Hirsch FR, Miller YE, RL, Dempsey EC, Kennedy TC Chest 2004 15136448 \N \N
383 Non-codingRNA sequence variations in human chronic lymphocytic leukemia and colorectal cancer. Wojcik SE, Kipps TJ, Nicoloso MS, Keating MJ, Herlea V, Alder H, Rossi S, Rassenti LZ, Cimmino A, Croce CM and Calin GA, Shimizu M, Rai KR Carcinogenesis 2010 19926640 \N \N
384 Modeling the width and placement of riparian vegetated buffer strips: a case study on the Chi-Jia-Wang stream, Taiwan Chou WC, Lin WT, Lin CY Journal of environmental management 2002 12448405 \N \N
385 Prostate cancer postoperative nomogram scores and obesity Slymen DJ, Major JM, Pierce JP, Klonoff-Cohen HS, Mercola D, Saltzstein SL, Macera CA, Kattan MW PloS one 2011 21390220 \N \N
386 Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays Kaminski, Dehan E, Franklin W, Geraci M, Barash Y, Krupsky M, N, Friedman N Bioinformatics 2004 14751998 \N \N
387 Diagnosis of prostate cancer using differentially expressed genes in stroma Yao H, Meyskens F, Koziol JA, Sawyers A, Sutton M, Rahmatpanah F, Goodison S, Simoneau A, Jia Z, McClelland M, Beach T, Turan T, Lernhardt W, Wang-Rodriguez J, Mercola D, Carpenter P, Xu Q, Pio R, Monforte J, Wang Y, Xia XQ Cancer research 2011 21459804 \N \N
388 Molecular classification and molecular genetics of human lung cancers Kelley J, Meyerson M, Franklin WA Seminars in Oncology 2004 14981576 \N \N
389 Chemoprevention of lung cancer--from biology to clinical reality. FR, Bunn PA, Franklin WA, Kotantoulas GK, Hirsch, Winterhalder RC Annals of Oncology 2004 14760107 \N \N
390 Assessing accuracy of a continuous screening test in the presence of verification bias Pepe MS, Alonzo TA Applied Statistics 2005 N/A \N \N
391 Quantifying and comparing the accuracy of binary biomarkers when predicting a failure time outcome Pepe MS, Moskowitz CS Statistics in Medicine 2004 15122736 \N \N
392 Quantifying and comparing the predictive accuracy of continuous prognostic factors for binary outcomes Moskowitz CS, Pepe MS Biostatistics 2004 14744831 \N \N
393 Evaluating markers for selecting a patient's treatment Pepe MS, Song X Biometrics 2004 15606407 \N \N
394 Identifying target populations for screening or not screening using logic regression Pepe MS, Janes H, Newcomb P, Kooperberg C Statistics in Medicine 2005 15568185 \N \N
395 The analysis of placement values for evaluating discriminatory measures Cai T, Pepe MS Biometrics 2004 15180681 \N \N
396 Standardizing markers to evaluate and compare their performances Pepe MS, Longton GL Epidemiology 2005 16135934 \N \N
397 Partly Conditional Survival Model for Longitudinal Data P, Heagerty, Zheng Y Biometrics 2005 16011684 \N \N
398 Proteomic analysis and identification of new biomarkers and therapeutic targets for invasive ovarian cancer Zhao Y, Petricoin III EF, Liotta LA, Krutzsch H, Jones MB, Shu H, Kohn EC Proteomics 2002 11788994 \N \N
399 Metastasis and angiogenesis in epithelial ovarian cancer Trope C, Fidler IJ, Jaffee R, Van Trappen P, Liotta LA, Kohn EC, Mills GB, Fishman DA Gynecologic Oncology 2003 N/A \N \N
400 Identification and Preliminary Clinical Evaluation of NMP 48, a Novel Serum Marker for Prostate Cancer Shue MJ, Mangold LA, Wu Y-J, Kelley S, Hass GM, Javier T, Briggman JV, Derby J, Stieg A, Hlavaty JJ, Partin AW, Sarracino D Urology 2002 N/A \N \N
401 Overexpression of alpha-defensin is associated with bladder cancer invasivness Blackmore PF, Schellhammer PF, Holterman DA, Diaz JI, Vlahou A, Semmes OJ, Davis JW, Corica A Urologic Oncology 2006 16520271 \N \N
402 Evaluating the Total Costs of Chemotherapy-Induced Toxicity: Results from a Pilot Study with Ovarian Cancer Patients Chang C, Lurain JR, Bennett CL, Calhoun EA, Fishman DA, Welshman EE The Oncologist 2001 11675522 \N \N
403 Resampling and deconvolution of linear time-of-flight records for enhanced protein profiling Sasinowski M, Malyarenko DI, Semmes OJ, Shin Sl, Drake RR, Tracy ER, Manos DM, Cooke WE Rapid Communications in Mass Spectrometry 2006 16637003 \N \N
404 Oral contraceptives, parity, and ovarian cancer risk in BRCA1/2 carriers Cramer DW, Kant JL, Fishman DA, Modungo F, Belle S, Nelson DB, Ness RB, Wheeler JE, Risch H, Wonderlick A, Naus G, Narod SA American Journal of Human Genetics 2001 11474660 \N \N
405 Activation of MapkS erk1/2 by Inhibin in Ovarian-Tissue Derived Cell Lines Woodruff TK, Santiago JY, Fishman DA, Roberson M, Hunnzicker-Dunn M, Stack MS The Journal of Cell Biology 2002 N/A \N \N
406 The Scientific Basis for the Early Detection of Early Stage Epithelial Ovarian Carcinoma Part 2 Bozorgi K, Singh D, Fishman DA, Lurain JR The Female Patient 2002 N/A \N \N
407 A novel approach for clustering proteomics data using bayesian fast fourier transform Bensmail H, Golek J, Haoudi A, Semmes OJ, Moody MM Bioinformatics 2005 15769836 \N \N
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432 Mucins in cancer: protection and control of the cell surface Hollingsworth MA, Swanson BJ Nature Reviews Cancer 2004 14681689 \N \N
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457 Global profiling of gene expression in cancer using genomics and proteomics Samir M, Hanash Current Opinion in Molecular Therapeutics 2001 11804268 \N \N
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469 Novel biomarkers and therapeutic targets for optimizing the therapeutic management of melanomas Mimeault M, Batra SK World journal of clinical oncology 2012 22442756 \N \N
470 Potentials of plasma NGAL and MIC-1 as biomarker(s) in the diagnosis of lethal pancreatic cancer Wittel U, Sasson A, Kaur S, Mallya K, Jain M, Singh SK, Chakraborty S, Brand R, Batra SK, Guha S, Baine MJ, Smith LM PloS one 2013 23383312 \N \N
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473 Tumor suppression by collagen XV is independent of the restin domain Lewandowska MA, Mutolo MJ, Morris KJ, Leir SH, Hollingsworth MA, Harris A, Caffrey TC Matrix biology : journal of the International Society for Matrix Biology 2012 22531369 \N \N
474 Overexpression of ecdysoneless in pancreatic cancer and its role in oncogenesis by regulating glycolysis Dey P, Batra SK, Gurumurthy CB, Hollingsworth MA, Lele S, Chakraborty S, Band V, Rachagani S, Singh PK, Anderson JM, Zhao X Clinical cancer research : an official journal of the American Association for Cancer Research 2012 22977192 \N \N
475 Interplay between smoking-induced genotoxicity and altered signaling in pancreatic carcinogenesis Wittel UA, Kaur S, Ponnusamy MP, Kumar S, Momi N, Batra SK Carcinogenesis 2012 22623649 \N \N
477 Potential role of HE4 in multimodal screening for epithelial ovarian cancer Forrest RM, Urban N, Kampani AV, Thorpe JD, Scholler N, Bergan LA, O Journal of the National Cancer Institute 2011 21917606 \N \N
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491 The neuronal repellent SLIT2 is a target for repression by EZH2 in prostate cancer Varambally S, Chen G, Wu JY, Li J, Wu L, Grasso C, Palanisamy N, Yu J, Lonigro RJ, Dallol A, Cao Q, Latif F, Cao X, Chinnaiyan AM, Mehra R Oncogene 2010 20622896 \N \N
492 Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma Han B, Ramnarayanan K, Fullen DR, Giordano TJ, Palanisamy N, Bismar TA, LaFargue CJ, Demichelis F, Cao Q, Suleman K, Johnson TM, Banerjee S, Dhanasekaran SM, Rubin MA, Cao X, Chinnaiyan AM, Maher CA, Esgueva R, Ateeq B, Kumar-Sinha C, Greenson JK, Siddiqui J, Varambally S, Moeller P, Pflueger D, Shankar S, Chen YB, Kalyana-Sundaram S, Tomlins SA, Kuefer R, Tan P Nature medicine 2010 20526349 \N \N
493 Predicting prostate cancer biochemical recurrence using a panel of serum proteomic biomarkers Chan DW, Zhang Z, Rosenzweig CN, Partin AW, Sokoll LJ, Osborne K, Sun X The Journal of urology 2009 19157448 \N \N
494 Glycoproteomics for prostate cancer detection: changes in serum PSA glycosylation patterns Meany DL, Zhang Z, Zhang H, Sokoll LJ, Chan DW Journal of proteome research 2009 19035787 \N \N
495 Circulating IL-8 and anti-IL-8 autoantibody in patients with ovarian cancer Gorelik E, Marrangoni AM, Winans M, Modugno F, Velikokhatnaya L, Landsittel D, Nolen BM, Lokshin AE Gynecologic Oncology 2006 16434085 \N \N
496 Combined antiangiogenic and immune therapy of prostate cancer Krasinskas A, Lokshin A, and Gorelik E, Raskovalova T, Huang X, Wolf SF, Watkins S, Devlin J Angiogenesis 2005 16132614 \N \N
497 Detection of RNA biomarkers in sputum of lung cancer patients and high risk smokers Keith R, Bemis L., Mitchell J, Sugita M, Miller Y, Haney J, Franklin W, Kennedy T, Hirsch F Lung Cancer 2005 N/A \N \N
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501 Multiplexed immunobead-based cytokine profiling for early detection of ovarian cancer Landsittel DP, Modugno F, Marrangoni AM, Gorelik E, Herberman RB, Winans MT, Lokshin AE, Bigbee WL, Velikokhatnaya L Cancer Epidemiology, Biomarkers & Prevention 2005 15824174 \N \N
502 Multianalyte profiling of serum cytokines for detection of pancreatic cancer Lokshin AE, Gorelik E, Whitcomb D, Moser A, Siegfried JM, Slivka A, Velikokhatnaya L, Bartlett D, Landsittel DP, Lotze MT, Lee K, Papacristou G, Winikoff S, Bigbee WL, Marrangoni AM, Zeh HJ, Winans MT Cancer Biomarkers 2005 17192050 \N \N
503 Obesity, adipokines, and prostate cancer in a prospective population-based study Platz EA, Haffner S, Pollock BH, Ankerst DP, Thompson IM, Troyer D, Lokshin A, Lynch S, Higgins B, Hernandez J, Baillargeon J, Leach RJ, Rose DP Cancer Epidemiology, Biomarkers & Prevention 2006 16835332 \N \N
504 High-sensitivity blood-based detection of breast cancer by multi photon detection diagnostic proteomics Holcman J, Krasik G, Brown LR, Tomaszewski JE, Koenig C, Drukier AK, Schors E, Schnall MD, Sulkowski M, Grigoriev I, Godovac-Zimmermann J, Sainsbury R, Ossetrova N, Lokshin AE Journal of Proteome Research 2006 16889412 \N \N
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510 DNA methylation-associated inactivation of TGF-beta related genes DRM/Gremlin, RUNX3, and HPP1 in human cancers. Frenkel EP, Sunaga N, Suzuki M, Shames DS, Takahashi T, Gazdar AF, Shigematsu H, Iizasa T, Shivapurkar N, Fujisawa T, Minna JD Br J Cancer 2005 16234815 \N \N
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512 Methylation of apoptosis related genes in the pathogenesis and prognosis of prostate cancer. T, Gazdar AF, Suzuki M, EP, N, Reddy JL, Takahashi, Shivapurkar, Miyajima K, Shigematsu H, and Frenkel Cancer Letters 2006 16458425 \N \N
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518 Glucocorticoids inhibit lung cancer cell growth through both the extracellular signal-related pathway and cell cycle regulators Basu S, Hu J, Reibman J, Yie TA, Greenberg AK, Rom WN, Lee TC, Hay J, Tchou-Wong KM Am J Respir Cell Mol Biol 2002 12204894 \N \N
519 Selective P38 activation in human non-small cell lung cancer Lee TC, Hu J, Greenberg AK, Tchou-Wong KM, Yie TA, Rom WN, Basu S Am J Respir Cell Mol Biol 2002 11970907 \N \N
521 N-Hydroxy-4-aminobiphenyl-DNA binding in human p53 gene: Sequence preference and the effect of C5 cytosine methylation Beland FA, Rom WN, Tang M-s, Feng Z, Hu W Biochemistry 2002 12009904 \N \N
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522 4-Aminobiphenyl is a major etiological agent of human bladder cancer: evidence from its DNA binding spectrum in human p53 gene Tang M-s, Feng Z, Beland FA, Rom WN, Hu W Carcinogenesis 2002 12376482 \N \N
523 Chromium exposure enhances polycyclic aromatic hydrocarbon – DNA binding at the p53 gene in human lung cells Rom W, Tang M-s, Feng Z, Hu W, Costa M Carcinogenesis 2003 12727806 \N \N
525 The major CD9 and CD81 molecular partner: Identification and characterization of the complexes Le Naour F, Faure G, Charrin S, Oualid M, Billard M, Boucheix C, Hanash SM, and Rubinstein E Journal of Biological Chemistry 2001 11278880 \N \N
527 History and molecular genetics of Lynch syndrome in Family G Bonner J, Meister KA, Watson P, Douglas JA, Krush AJ, Lynch HT, Gruber SB Journal of the American Medical Association 2005 16264161 \N \N
528 Peptide sequence confidence in accurate mass and time analysis and its use in complex proteomics experiments and McIntosh M, Hanash S, Law W, May D, Liu Y, Fitzgibbon M, Wang H Journal of Proteome Research 2008 19367719 \N \N
529 Technological and statistical barriers to biomarker validation, Invited Commentary McIntosh M Nature Biotechnology 2009 N/A \N \N
530 Integrating Biomedical Knowledge to Model Pathways of Prostate Cancer Progression Rhodes DR, Morris DS, Shah RB, Tomlins SA, Mehra R, Chinnaiyan AM Cell Cycle 2007 17495538 \N \N
531 Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. Anstet MJ, Kincead-Beal C, Varambally R, Rhodes DR, Ghosh D, Kalyana-Sundaram S, Barrette TR, Varambally S, Kulkarni P, Briggs BB, Chinnaiyan AM, Mahavisno V, Yu J Neoplasia 2007 17356713 \N \N
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533 Software platform for rapidly creating computational tools for mass spectrometry-based proteomics Fang Q, Fitzgibbon M, Law W, May D, and McIntosh M Journal of Proteome Research 2009 19309175 \N \N
534 Autoantibody approach for serum-based detection of head and neck cancer Wojciechowski J, Mohapatra S, Basson MD, Ionan A, Chatterjee M, Pan CJ, Ye B, Talwar HS, Draghici S, Lonardo F, Abrams J, Yoo GH, Tarca AL, Peshek B, Lin HS, Tainsky MA, Folbe AJ Cancer Epidemiology, Biomarkers & Prevention 2007 18006929 \N \N
535 Modes of inference for evaluating the confidence of peptide identifications and McIntosh M, Li Q, Fitzgibbon M Journal of Proteome Research 2008 18067248 \N \N
536 Role of the TMPRSS2-ERG gene fusion in prostate cancer Cao X, Helgeson BE, Prensner JR, Shah RB, Cao Q, Laxman B, Tomlins SA, Chinnaiyan AM, Rubin MA, Yu J, Varambally S, Mehra R Neoplasia 2008 18283340 \N \N
537 Next-generation highdensity self-assembling functional protein arrays Andreas Rolfs, Yanhui Hu & Joshua LaBaer, Niroshan Ramachandran, Manuel G Fuentes, Eugenie Hainsworth, Gokhan Demirkan, Jacob V Raphael Nature Methods 2008 18469824 \N \N
538 A first-generation multiplex biomarker analysis of urine for the early detection of prostate cancer. Chinnaiyan AM, Morris DS, Tsodikov A, Mehra R, Wei JT, Yu J, Siddiqui J, Cao J, Lonigro RJ, Laxman B, Tomlins SA Cancer Research 2008 18245462 \N \N
539 Use of cancer-specific yeast-secreted in vivo biotinylated recombinant antibodies for serum biomarker discovery Scholler N, Wells L, Loch CM, Garvik B, Gross JA, and Urban N, McIntosh MW, Liu Y, Ramirez AB, Lampe PD Journal of Translational Medicine 2008 18652693 \N \N
540 Comparison of total PSA and derivative levels in a screening population of African-American, Caucasian, and Korean-American men. Partin AW, Sokoll LJ, Gurganus R, Khan MA, Mangold LA, and Veltri RW., Park J, Bruzek DJ, Chan DW Clinical Prostate Cancer 2004 15040861 \N \N
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549 Stromal-Epithelial Measurements of Prostate Cancer in Native Japanese and Japanese-American Men. Jae Park, Munekado Kojima, Veltri, Leonard S. Marks, M.C. Miller, and Alan W. Partin., Cameron van Rootselaar, Masood A. Khan, RW The Prostate 2004 15303120 \N \N
550 Aquaporin 1 is overexpressed in lung cancer and stimulates NIH-3T3 cell proliferation and anchorage-independent growth Lee,J, Saoria,JC, Desmaze,C, Upadhyay,S, Moon,C, Trink,B, Sidransky,D, Woo,J, Mai,L, Lee,T, Jang,SJ, Hoque,MO, Monitto,C American Journal of Pathology 2006 16565507 \N \N
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553 Assessment of gene promoter hypermethylation for detection of cervical neoplasia Reesink-Peters,N, Nijhuis,ER, Volders,HH, Koning,AJ, Schuuring,E, Hoque,MO, Buikema,HJ, Hollema,H, Boezen,HM, Sidransky,D,, Wisman,GB International Journal of Cancer 2006 16736496 \N \N
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635 Heterogeneous Ribonucleoprotein (hnRNP) Antibody in Thyroid Neoplasia. Tannenbaum M, and Tockman MS., Zhukov TA, Bidot P, Morgan MB American Assoc of Clin Endocrinologists 2000 11421561 \N \N
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671 Hereditary cancer syndrome diagnosis: molecular genetic clues and cancer control Lynch HT, Lynch JF, Fusaro RM Future Oncology 2007 17381417 \N \N
672 Toward a consensus in molecular diagnosis of hereditary nonpolyposis colorectal cancer (Lynch syndrome) Lynch PM, Lynch HT, Lynch JF Journal of the National Cancer Institute 2007 17312298 \N \N
673 Inactivation of cyclin D2 gene in prostate cancers by aberrant promoter methylation Minna JD and Gazdar AF, Suzuki M, Maruyama R, Sathyanarayana UG, Padar A, Hsieh JT, Frenkel EP Clinical Cancer Research 2003 14581343 \N \N
675 Quantitative detection of promoter hypermethylation as a biomarker of acyte kidney injury during transplantation Rahman,MH, Hoque,MO, Kraus,E, Sidransky,D, Montgomery,R, Ugarte,R, Rabb,H, Melancon,K, Mehta,TK Transplant Proc 2006 17175292 \N \N
677 Increased expression and activity of repair genes TDP1 and XPF in non-small cell lung cancer Zhou,S, Califano,JA, Westra,WH, Sidransky,D, Begum,S, Brock,M, Liu,C Lung Cancer 2007 17118488 \N \N
678 Dysfunctional KEAP1-NRF2 interaction in non-small-cell-lung cancer Gabrielson,E, Singh,Am Misra,V, Lee,H, Baylin,SB, Herman,JG, Brock,MV, Ames,S, Sidransky,D, Biswal,S, Thimmulappa,RK, Hoque,MO PLoS Med 2006 17020408 \N \N
679 Smoke exposure, histologic type and geography-related differences in the methylation profiles of non-small cell lung cancer Virmani AK, Fukuyama Y, Zochbauer-Muller S, Feng Z, Shimizu K, Sugio K, Chen CY, Minna JD and Gazdar AF, Gilcrease M, Toyooka S, Shimizu N, Tsukuda K, Maruyama R, McLerran D, Toyooka KO, Fong KM, Roth JA, Lee H International Journal of Cancer 2003 12455028 \N \N
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688 Characterization of amplifiable, circulating RNA in plasma and its potential as a tool for cancer diagnostics. Godfrey TE., Kirkwood JM, El-Hefnawy T, Raja S, Bigbee WL, Kelly L, Luketich JD Clinical Chemistry 2004 14718398 \N \N
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696 Mitochondrial cytochrome B gene mutation promotes tumor growth in bladder cancer Sidransky D, Dasgupta S, Hoque MO, Upadhyay S Cancer Research 2008 18245469 \N \N
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698 ALDH1A1 is a marker for malignant prostate stem cells and predictor of prostate cancer patients' outcome. Leng B, Leng !, Yun S, Liu Z, Mei Y, Stass SA, Jiang F., Li T Laboratory Investigation 2010 20010854 \N \N
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702 Phospho-p70S6K/p85S6K and cdc2/cdk1 are novel targets of difuse large B-cell lymphoma combination therapy Zhao XF, Zhao MY, Burger A, Auerbach A, D'Costa A, Jiang F, Rapoport A, Sands A, Stass S, Sausville E, Aguilera N Clinical Cancer Research 2009 19223503 \N \N
703 Targeted disruption of Aurora-A causes abnormal mitotic spindle assembly, chromosome misalignment and embryonic lethality Sasai K, Adams HP, Stass SA, Brandt ME, Katayama H, Killary AM, Parant JM, Sen S, Carter JL Oncogene 2008 18345035 \N \N
704 C-MYC rearrangements are frequent in aggressive mature B-Cell lymphoma with atypical morphology Hassan A, Zhao X, Dehner L, Ning Y, Perry A, Stass S International Journal of Clinical and Experimental Pathology 2008 18784824 \N \N
705 Detecting genomic aberrations by fluorescence in situ hybridization with quantum dots-labeled probes Li R, Todd NW, Jiang Z, Stass SA, Jiang F J Nanosci Nanotechnol 2007 18283800 \N \N
706 Detection of the Potential Pancreatic Cancer Marker MUC4 in Serum Using Surface-Enhanced Raman Scattering Chakraboty S, Porter MD, Wang G, Torres MP, Brand RE, Lipert RJ, Jain M, Kaur S, Batra SK Analytical chemistry 2011 21391573 \N \N
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709 Robust Prediction of t-Year Survival with Data from Multiple Studies Chen J, Cai T, Zheng Y, Gerds TA Biometrics 2010 20670303 \N \N
710 Genomic instability and copy-number heterogeneity of chromosome 19q, including the kallikrein locus, in ovarian carcinomas Li L, Squire JA, Katsaros D, Lassus H, Marrano P, Butzow R, Bayani J, Zheng Y, Diamandis EP, Graham C Molecular oncology 2011 20800559 \N \N
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712 CD90/THY1 is overexpressed in prostate cancer-associated fibroblasts and could serve as a cancer biomarker Ye M, Tjoelker LW, True LD, Zhang H, Kim JS, Qian WJ, von Haller PD, Ellis WJ, Liu AY, Huang CY, Liebeskind ES, Smith RD, Nelson PS Modern Pathology 2010 20562849 \N \N
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731 MUC1 mucin stabilizes and activates hypoxia-inducible factor 1 alpha to regulate metabolism in pancreatic cancer Hollingsworth MA, Purohit V, Mehla K, Chaika NV, Singh PK, Zhang B, Radhakrishnan P, Powers R, Lewallen ME, Gebregiworgis T, Liu X, Johnson KR, Caffrey T, Yu F, Brown RB Proceedings of the National Academy of Sciences of the United States of America 2012 22869720 \N \N
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736 Association of chromosome 8q variants with prostate cancer risk in Caucasian and Hispanic men Martinez-Fierro ML, Crandall AC, Thompson IM, Gelfond JA, Rojas-Martinez A, Beuten J, Leach RJ, Weldon KS Carcinogenesis 2009 19528667 \N \N
737 Association of polymorphisms in TGFB1 and prostate cancer prognosis Baillargeon J, Thompson IM, Troyer DA, Naylor SL, Brand TC, Bermejo C, Canby-Hagino E, Leach RJ The Journal of Urology 2008 18082198 \N \N
738 Prostate cancer detection strategies Thompson IM, Canby-Hagino ED, Brand TC, Hernandez J, Basler JW Current Urology Reports 2006 16630521 \N \N
739 Prostate cancer risk with positive family history, normal prostate examination findings, and PSA less than 4.0 ng/mL Canby-Hagino E, Thompson IM, Leach RJ, Ankerst DP, Higgins B, Brand TC, Troyer DA, Hernandez J, Parekh DJ Urology 2007 17991549 \N \N
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741 XPA Polymorphism Associated with Reduced Lung Cancer Risk by Modulating Nucleotide Excision Repair Capacity Qiao Y, Hong WK, Amos CI, Wu X, Wei Q, Zhang K, Zhao H, Spitz MR, Guo Z Cancer Research 2002 N/A \N \N
742 BPDE-induced lymphocytic 3p21.3 aberrations may predict head and neck cancer risk Zheng Y, Hong WK, Spitz MR, Zhu Y, Wu X Cancer 2002 12209748 \N \N
744 Microsomal Epoxide Hydrolase Polymorphisms and Lung Cancer Risk in Non-Hispanics Whites Gwyn KM, Wu X, Spitz MR, Zhao H Molecular Carcinogenesis 2002 11813302 \N \N
745 Lung cancer susceptibility associated with p53 genotypes and haplotypes in various ethnic groups Hong WK, Spitz MR, Amos CI, Shete S, Kadlubar FF, Wu X, Zhao H, Makan N Journal of the National Cancer Institute 2002 11983757 \N \N
746 Chromosome Instability in Lymphocytes: A Potential Indicator of Predisposition to Oral Premalignant Lesions Lee JJ, Spitz MR, Tomas M, Lippman SM, Wu X, Hong WK, Zhu Y, Wei QV Cancer Research 2002 12019158 \N \N
747 Sulphotransferase (SULT) 1A1 Polymorphism as a Predisposition Factor for Lung Cancer: A Case-Control Analysis Wang Y, Makan N, Spitz MR, Zhang K, Wu X, Tsu A Lung Cancer 2002 11804685 \N \N
748 XPD/ERCC2 EXON 8 Polymorphisms: rarity and lack of significance in risk of squamous cell carcinoma of the head and neck Eicher SA, Wei Q, Strom SS, Li L, Castillo EJ, Sturgis EM, Spitz MR Oral Oncology 2002 12110342 \N \N
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774 Biomarkers for cancer risk, early detection and prognosis: The validation conundrum Normolle D, Brenner DE Cancer Epidemiology, Biomarkers & Prevention 2007 17932336 \N \N
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779 Autoantibody profiles reveal ubiquilin 1 as a humoral immune response target in lung adenocarcinoma. Beer DG, Fielhauer J, Giordano TJ, Wang X, Chang AC, El-Hefnawy T, Orringer MB, Wang R, Varambally S, Thomas DG, Bigbee WL, Ghosh D, Chinnaiyan AM., Wang Z, Chen G, Vishnu P, Lin M-Y, Giacherio D, Yu J Cancer Research 2007 17409457 \N \N
780 A multiparametric panel for ovarian cancer diagnosis, prognosis and response to chemotherapy Feng Z, Longrais I, Simon I, Wolfert R, Shan S, Diamandis E, Katsaros D, Li L, Scorilas A, Kim N, Zheng Y, Massobrio M Clinical Cancer Research 2007 18056174 \N \N
781 Understanding the development of human bladder cancer by using a whole-organ genomic mapping strategy Ahmed SS, Scherer SE, McCondey DJ, Harris RA, Chung W, Lynch HT, Bar-Eli M, Jeon J, Dinney CP, Bondaruk J, Park W-S, Issa J-P, Kim M-S, Watson P, Tang KS, Wu XF, Czerniak B, Shen L, Snyder C, Kram A, Narod SA, Tuziak T, Zhou J-H, Baggerly K, Yoon D-S, Filipek S, Grossman HB, Majewski T, Johnston DA, Benedict WF, Gazdar A, Lee S Laboratory Investigation 2008 18458673 \N \N
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786 Enzymes and related proteins as cancer biomarkers: a proteomic approach Chan DW, Liang SL Clinica Chimica Acta 2007 17382922 \N \N
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788 Assessing Accuracy of Mammography in the Presence of Verification Bias and Intrareader Correlation Zheng Y, Cutter G, Barlow W Biometrics 2005 15737102 \N \N
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792 Comparing the predictive values of diagnostic tests: sample size and analysis for paired study designs Pepe MS, Moskowitz CS Clinical Trials 2006 16895044 \N \N
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794 Ultrasensitive Detection and Characterization of Posttranslational Modifications Using Surface-Enhanced Raman Spectroscopy Sung K, N, Feng Z, Berlin A, Gafken P, Zhang J, Sun L, McLerran D, Su X, Randolph T, Yamakawa M, Chan S, Mao D, Koo T-W, Sundarajan, Roth M Analytical Chemistry 2006 16737206 \N \N
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806 Cancer biomarkers: can we turn recent failures into success? Diamandis EP Journal of the National Cancer Institute 2010 20705936 \N \N
807 Pentraxin-3 Is a Novel Biomarker of Lung Carcinoma Thornquist MD, Diamandis EP, Goodglick L, Planque C Clinical cancer research : an official journal of the American Association for Cancer Research 2011 21257721 \N \N
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809 Yeast screens identify the RNA polymerase II CTD and SPT5 as relevant targets of BRCA1 interaction Westmoreland TJ, Falae AI, Mishina YV, Selim AL, Galli A, Bailey DD, Greenleaf AL, Huper G, Verrier CS, Sabin TL, Bennett CB, Madison ER, Marks JR, Olson JA, Blanchette CA, Phatnani HP PloS one 2008 18197258 \N \N
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816 In vivo NCL targeting affects breast cancer aggressiveness through miRNA regulation Talabere T, Lagana A, Shapiro CL, Piovan C, Marcucci G, Cascione L, Rocci A, Volinia S, Guan J, Nuovo G, Balatti V, Freitas MA, You J, Byrd JC, Consiglio J, Gasparini P, Hofmeister CC, Croce CM, Palmieri D, Pichiorri F, Coppola V, De Luca L The Journal of experimental medicine 2013 23610125 \N \N
817 Prognostic microRNA/mRNA signature from the integrated analysis of patients with invasive breast cancer Volinia S, Croce CM Proceedings of the National Academy of Sciences of the United States of America 2013 23589849 \N \N
819 Transcription signatures encoded by ultraconserved genomic regions in human prostate cancer Volfovsky N, Yi M, Prueitt RL, Schetter AJ, Calin GA, Croce CM, Van Roosbroeck K, Volinia S, Ambs S, Liu CG, Stephens RM, Esposito D, Hudson RS Molecular cancer 2013 23409773 \N \N
820 A new role for microRNAs, as ligands of Toll-like receptors Paone A, Croce CM, Calore F, Fabbri M, Galli R RNA biology 2013 23296026 \N \N
821 miRNA profiling of cancer Croce CM, Di Leva G Current opinion in genetics & development 2013 23465882 \N \N
822 Integrated microRNA and mRNA signatures associated with survival in triple negative breast cancer Shapiro CL, Ferro A, Gasparini P, Carasi S, Huebner K, Croce CM, Lovat F, Cascione L, Pulvirenti A, He G, Alder H, Vecchione A PloS one 2013 23405235 \N \N
823 Clinical applications for microRNAs in cancer Nana-Sinkam SP, Croce CM Clinical pharmacology and therapeutics 2013 23212103 \N \N
824 Effects of blood collection conditions on ovarian cancer serum markers Nelson B, Segal E, McIntosh M, Brown L, Lowe K, Anderson GL, and Urban N, Thorpe JD, Forrest R, Duan X PLoS ONE 2007 18060075 \N \N
826 Current status of mucins in the diagnosis and therapy of cancer Batra SK, Rachagani S, Torres MP, Moniaux N BioFactors (Oxford, England) 2009 19904814 \N \N
830 Membrane-bound mucins: the mechanistic basis for alterations in the growth and survival of cancer cells Batra SK, Bafna S, Kaur S Oncogene 2010 20348949 \N \N
832 External validation of the Prostate Cancer Prevention Trial risk calculator in a screened population Parekh DJ, Higgins BA, Leach RJ, Brand T, Ankerst DP, Thompson IM, Canby-Hagino E, Hernandez J, Troyer DA Urology 2006 17169636 \N \N
834 Body mass index adjusted prostate-specific antigen and its application for prostate cancer screening Liang Y, Sanchez M, Thompson IM, Ankerst DP, Leach RJ Urology 2010 20739049 \N \N
835 Prospective evaluation of operating characteristics of prostate cancer detection biomarkers Thompson IM, Ankerst DP, Leach RJ, Liang Y, Shah G, Ercole B, Shaughnessy JD, Ketchum NS The Journal of Urology 2011 21074193 \N \N
836 Urine metabolomics analysis for kidney cancer detection and biomarker discovery Thompson IM, Kim K, Aronov P, Zakharkin SO, Anderson D, Weiss RH, Perroud B Molecular & Cellular Proteomics : MCP 2009 19008263 \N \N
837 Prostate-specific antigen: a review of the validation of the most commonly used cancer biomarker Thompson IM, Hernández J Cancer 2004 15329895 \N \N
838 Association between an estrogen receptor alpha gene polymorphism and the risk of prostate cancer in black men Hernández J, Higgins BA, Balic I, Thompson IM, Torkko KC, Johnson-Pais TL, Leach RJ The Journal of Urology 2006 16406987 \N \N
839 Regulation of Cox-2 by cyclic AMP response element binding protein in prostate cancer: potential role for nexrutine Thompson IM, Kumar AP, Inoue H, Troyer DA, Crosby K, Garcia GE, Ghosh R Neoplasia (New York, N.Y.) 2007 18030357 \N \N
842 Molecular predictors of outcome with gefitinib in a phase III placebo-controlled study in advanced non-small-cell lung cancer. R. Dziadziuszko, E. Donald, J. von Pawel, G. Ellison, J. R. Pereira, C. Watkins, T. Ciuleanu, P. A. Bunn Jr, L. Knight, N. Botwood, D. Parums, A. Flannery, M. Varella-Garcia, Hirsch, F. R., and B. Holloway., P. Parikh, N. Thatcher, W. A. Franklin, A. Chang Journal of Clinical Oncology 2006 17075123 \N \N
843 p53 mutations and survival in stage I non-small-cell lung cancer: results of a prospective study Ahrendt,SA, Benoit,N, Buta,M, Sidransky,D, Yang,SC, Wu,L, Hu,Y, McDermott,MP J National Cancer Inst 2003 12837832 \N \N
844 Gene promoter hypermethylation in tumors and lymph nodes of stage I lung cancer patients Tokumaru,Y, Goodman,S, Yang,SC, Sidransky,D, Harden,SV, Ahrendt,SA, Westra,WH Clinical Cancer Research 2003 12684406 \N \N
845 Promoter hypermethylation of multiple genes in sputum precedes lung cancer incidence in a high-risk cohort. Belinsky, W. A. Franklin, and T. Byers., T. C. Kennedy, K. Vu, Y. Miller, J. G. Herman, J. Haney, H. J. Wolf, S. A., F. R. Hirsch, P. A. Bunn, F. D. Gentry, K. C. Liechty, S. B. Baylin, J. Rogers Cancer Research 2006 16540689 \N \N
846 Plasma Levels of Insulin-like Growth Factor-1 and Binding Protein-3 and their association with Bladder Cancer Risk Zhao H, Zhang K, Spitz MR, Lerner SP, Wu X, Grossman HB The Journal of Urology 2002 12544349 \N \N
848 Inherited Genetic Instability of Specific Chromosomes Associated with Family History of Cancer Spitz MR, Hsu TC, Wu X, Zhu Y Cancer Genetics and Cytogenetics 2002 9118034 \N \N
849 Making sense of microarray data to classify cancer C, Hanash, S and Creighton Pharmacogenomics Journal 2003 14597962 \N \N
850 Diminished Expression of S100A2 a Putative Tumor Suppressor at Early Stage of Human Lung Carcinogenesis Lotan R, Feng G, Youssef EM, Xu X Cancer Research 2001 11691825 \N \N
851 Polymorphisms of Methylene-tetrahydrofolate Reductase and Risk of Lung Cancer - A Case Control Study Hong WK, Spitz MR, Wei Q, Shen H, Wang L Cancer Epidemiology, Biomarkers & Prevention 2001 11319182 \N \N
853 Modulation of Nucleotide Excision Repair Capacity by XPD Polymorphisms in Lung Cancer Patients Wei Q, Shete S, Wu X, Lei L, Amos CI, Mohrenweiser H, Guo Z, Spitz MR, Wang Y, Wang L-E Cancer Research 2001 11245433 \N \N
854 Mitochondrial DNA alterations in thyroid cancer Westra,WH, Tong,BC, Dhir,K, Ha,PK, Califano,JA, XIng,M, Sidransky,D J Surg Oncol 2003 12619060 \N \N
855 Aberrant methylation of HIN-1 (high in normal-1) is a frequent event in many human malignancies. Takahashi T, Pass HI, Suzuki M, Shivapurkar N, Fujisawa T, Shigematsu H, Miyajima K, Tomlinson GE, Toyooka S, Brambilla E, Gazdar AF, Sathyanarayana UG, Czerniak B, Shimizu N, Mastrangelo D International Journal of Cancer 2005 15472908 \N \N
856 Aberrant methylation of Reprimo in human malignancies. Nomura M, Shigematsu H, Echebiri C, Wistuba II, Shivapurkar N, Stastny VA, Takahashi T, Wu CW, Meltzer SJ, Augustus M, Gazdar AF, Suzuki M International Journal of Cancer 2005 15700311 \N \N
857 Clinical and biological features associated with Epidermal Growth Factor Receptor gene mutations in lung cancers. Minna JD, Shimizu N, Herz J, Takahashi T, Suzuki M, Lin L, Roth JA, Wistuba II, Fong KM, Toyooka S, Fujisawa T, Nomura M, Shigematsu S, Lee H, Gazdar AF, Feng Z Journal of the National Cancer Institute 2005 15741570 \N \N
858 Aberrant promoter hypermethylation of multiple genes in gallbladder carcinoma and chronic cholecystitis. Reddy JL, Miyajima K, Shivapurkar N, Wistuba, II, Riquelme E, Zhou X, Takahashi T, Bekele BN, Shigematsu H, Suzuki M, Gazdar AF Clinical Cancer Research 2004 15447999 \N \N
859 Somatic mutations of the HER2 kinase domain in lung adenocarcinomas. Lee H, Toyooka S, Fujisawa T, Fong KM, Takahashi T, Shigematsu S, Minna JD, Majmudar K, Gazdar AF, Nomura M, Suzuki M, Shimizu N, Wistuba II Cancer Research 2005 15753357 \N \N
860 Differential methylation of genes that regulate cytokine signaling in lymphoid and hematopoietic tumors. Takahashi T, Reddy JL, Zochbauer-Muller S, Stastny VA, Gazdar AF, McKenna, Drach J, Zheng Y, Crumrine K, RW, Parikh G, Echebiri C, Shivapurkar N, Kroft SH, Feng Z Oncogene 2005 15580314 \N \N
861 Novel real time PCR assay using a universal molecular marker for diagnosis of hematologic cancers. Shivapurkar N, Reddy JL, Gazdar AF, Takahashi T, Stastny VA, Suzuki M, Echebiri C International Journal of Cancer 2005 15825171 \N \N
862 Aberrant methylation profile of human malignant mesotheliomas and its relationship to SV40 infection. Carbone M, Takahashi T, Pass HI, Miyajima K, Fujisawa T, Toyooka S, Shivapurkar N, Shigematsu H, Suzuki M, Gazdar AF, Zern AL, Stastny VA Oncogene 2005 15592515 \N \N
863 Quantitative GSTP1 methylation and the detection of prostate adenocarcinoma in sextant biopsies Godman,SN, Sidransky,D, Walsh,PC, Partin,AA, Sanderson,H, Harden,SV, Epstein,JI Journal of the National Cancer Institute 2003 14600096 \N \N
864 Belinsky, S. A., M. J. Grimes, E. Casas, C. A. Stidley, W. A. Franklin, T. J. Bocklage, D. H. Johnson, and J. H. Schiller. S. A., W. A. Franklin, E. Casas, Belinsky, C. A. Stidley, D. H. Johnson, and J. H. Schiller., T. J. Bocklage, M. J. Grimes British Journal of Cancer 2007 17406356 \N \N
865 Chromosome 18 suppresses the tumorigenicity of prostate cancer cells Johnson-Pais TL, Padalecki SS, Leach RL, Killary AM Cancer Genetics and Cytogenetics 2001 11170278 \N \N
867 Multiple unrelated translocations in a metastatic epimyoepithelial carcinoma of the parotid gland Ordonez NG, El-Naggar AK, Lovell M, Killary AM Cancer Genetics and Cytogenetics 1998 9428361 \N \N
868 Physical and functional mapping of a tumor suppressor locus for renal cell carcinoma within chromosome 3p12 Lott ST, Naylor SL, Killary AM, Lovell M Cancer Research 1998 9721855 \N \N
869 Cytogenetic analysis of a primary salivary gland myoepithelioma Ordonez NG, Lovell M, Callender DL, El-Naggar AK, Killary AM Cancer Genetics and Cytogenetics 1999 10459346 \N \N
870 Functional evidence for an ovarian cancer tumor suppressor gene on chromosome 22 by microcell-mediated chromosome transfer Cabeza-Arvelaiz Y, Yu Y, Killary AM, Wiener JR, Bast RC. Jr, Lovell M, Mills GB, Pershouse M, Kruzelock RP, Cuevas BD, Xu F-J Oncogene 2000 11175342 \N \N
871 Limited non-random chromosomal aberrations in a recurrent adenoid cystic carcinoma of the parotid gland Lovell M, Killary AM, El-Naggar A, Callender DL Cancer Genetics and Cytogenetics 1999 9973962 \N \N
873 Recent developments in biomarkers for the early detection of lung cancer: perspectives based on publications 2003 to present Merrick DT, Franklin WA, Chanin TD, Hirsch FR Curr Opin Pulm Med 2004 15220746 \N \N
875 Mitochondrial DNA as a cancer biomarker Parr RL, Maragh S, Dakubo GD, Jakupciak JP Current Opinion in Molecular Therapeutics 2006 15858150 \N \N
876 Standards for validation of cancer biomarkers and Jakupciak JP, O’Connell CD, Atha DH Cancer Biomarkers 2005 17192047 \N \N
877 Real-time telomerase activity measurements for detection of cancer Jakupciak JP Expert Review of Molecular Diagnostics 2005 16149877 \N \N
878 Mitochondrial DNA as a cancer biomarker Ally D, Barker PE, Srivastava S, Jakupciak JP, O'Connell CD, Wang W, Maitra A, Coble M, Sidransky D, Markowitz ME Journal of Molecular 2005 15858150 \N \N
879 Real-time telomerase assay of less-invasive collected samples Taylor PR, Wang W, Atha DH, Srivastava S, Abnet CC, Wei W-Q, McGruder BM, Huppi K, Dawsey SM, Qiao Y-L, Jakupciak JP Cancer Letters 2006 16569479 \N \N
880 Inter-rater agreement on chromosome 5 breakage in FISH-based mutagen sensitivity assays (MSAs) Wagner PD, Pinsky P, Wang W, Barker PE Mutation Research 2004 15279836 \N \N
881 Semiconductor nanocrystal conjugates, FISH and pH Telford WG, Barker PE, Xiao Y, Locascio LE, Ball JC Nature Methods 2005 16179915 \N \N
882 Preface to standards for healthcare: needs assessment and development Barker PE Cancer Biomarkers 2005 N/A \N \N
883 Preparation and characterization of candidate reference materials for telomerase assays Jakupciak JP, Wang W, Atha DH, Barker PE, Srivastava S Clinical Chemistry 2005 15951318 \N \N
884 Deregulated EGFR signaling during lung cancer progression: Mutations, amplicons, and autocrine loops Gazdar AF, Minna JD Cancer Prevention Research 2008 19138950 \N \N
886 Global leukocyte DNA methylation is similar in African American and Caucasian under conditions of controlled folate intake. S.S. Pogribny, Smith, D.J. and Caudill, Axume, Moriarty, J., M.A., I. Epigenetics 2007 17965592 \N \N
887 Prostate Cancer Molecular Markers GSTP1 and hTERT in Expressed Prostatic Secretion as Predictors of Biopsy. Crocitto, Shevchuk, Blair, L., Korns, Kretzner, S.S., L.E., and Smith, S.L., T.G.,Ramin, T., Kawachi, D., S., Wilson, M.H. Urology 2004 15491741 \N \N
888 Design and Analysis of Nanoscale Bioassemblies J., and Smith, D.R. Korns, Clark, S.S., E.M. Singer Biotechniques 2004 15211750 \N \N
889 Construction of Ordered Protein Arrays. Crocitto, Clark, Dabur, P.M., J., Ya.I. and Smith, R., S.S., L.E. Buryanov, T. Swederski, Shevchuk Methods in Molecular Biology 2005 15657490 \N \N
890 Transgene-Induced CCWGG Methylaton Does Not Alter Human CG Methylation Patterning Caudhill, Munson, T., K., Buryanov,Y., J., O.V., Shevchuk, Kretzner, M.A., L., Dyachenko, Auxme Nucleic Acids Research 2005 16246913 \N \N
891 Application of Nanoscale Bioassemblies to Clinical Laboratory Diagnostics J. and Smith, S. S., Clark Advances in Clinical Chemistry 2006 N/A \N \N
892 Gastric Carcinogenesis Through Tobacco Chewing: in vitro Mechanistic Studies of DNA Nitrite Attack. S. S. and R.E. Schwartz, Smith Cancer Letters 2006 15946796 \N \N
893 Nucleoprotein Assemblies for Cellular Biomarker Detection E. M. and Smith, Singer, S. S. NanoLetters 2006 16771577 \N \N
894 Isoform Analysis of LC-MS/MS Data from Multidimensional Fractionation of the Serum Proteome Krasnoselsky AL, Hanash SM, Zhang Q, Faca VM, Pitteri SJ Journal of Proteome Research 2008 18419151 \N \N
895 Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes Krasnoselsky A, Fitzgibbon M, Zhang Q, Struthers J, Wang H, Faca V, Pitteri S, McIntosh M, Eng J, Newcomb L, Hanash S, Glukhova V, Phanstiel D Journal of Proteome Research 2007 17696519 \N \N
898 Identification of 14-3-3 theta as an antigen that induces a humoral response in lung cancer Kuick R, Misek DE, Puravs E, Krasnoselsky A, Tammemagi M, Phanstiel D, Brenner DE, Edelstein C, Thornquist M, Pereira-Faca S, Caporaso N, Pfeiffer R, Qiu J, Landi M, Hanash SM, Zhang Q, Hinderer R, Goodman G, Barnett M Cancer Research 2007 18089831 \N \N
899 Integral protein microarrays for the identification of lung cancer antigens in sera that induce a humoral immune response Madoz-Gurpide J et al Molecular and Cellular Proteomics 2008 17916591 \N \N
900 Osteopontin is linked to p65 and MMP-9 expression in pulmonary adenocarcinoma but not in malignant pleural mesothelioma. Frey AB, Wali A, Lonardo F, Pass H Histopathology 2007 17493236 \N \N
901 Mitochondrial D-loop mutations as clonal markers in multicentric hepatocellular carcinoma and plasma Sidransky,D, Nomoto,S, Yamashita,K, Koshikawa,K, Nakao,A Clinical Cancer Research 2002 11839667 \N \N
902 A mesothelioma epidemic in Cappadocia: scientific developments and unexpected social outcomes Emri S, Tuncer M, Pass HI, Steele I, Dogan AU, Carbone M, Baris YI Nat Rev Cancer 2007 17251920 \N \N
903 Aberrant promoter methylation of insulin-like growth factor binding protein-3 gene in human cancers Kisimoto T, Tsukuda K, Naitou M, Asano H, Tomii K, Katayama H, Date H, Toyooka S, Pass HI, Shimizu N, Dote H, Hanafusa T, Doihara H International Journal of Cancer 2007 17096329 \N \N
904 Discovery of cancer biomarkers through the use of mouse models Webb CP, Kuick R, Wang H, Misek DE, Omenn GS, Hanash SM, Peterson KJ, Monsma DJ, Pisano M Cancer Letters 2007 17320282 \N \N
906 Epitomics: serum screening for the early detection of cancer on microarrays using complex panels of tumor antigens. Tainsky MA., Draghici S, Chatterjee M Expert Rev Mol Diagn. 2005 16149876 \N \N
907 Alpha-fetoprotein, des-gamma carboxyprothrombin, and Lectin-bound alpha-fetoprotein in early hepatocellular carcinoma. Marrero JA, Reddy KR, Srivastava S, Feng Z, Lok AS, Wang Y, Normolle D, Nguyen MH, Llovet JM, Dalhgren J, Schwartz M, Roberts LR, Wagner PD, Befeler AS, Harnois D, Chia D Gastroenterology 2009 19362088 \N \N
908 A multicenter, double-blinded validation study of methylation biomarkers for progression prediction in Barrett's esophagus Romero Y, Nelson MA, David S, Kan T, Olaru AV, Sato F, Meltzer SJ, Hamilton JP, Abraham JM, Selaru FM, Wolfsen HC, Wagner PD, Ito T, Feng Z, Shaheen NJ, Agarwal R, Bhattacharyya A, Yang J, Gu W, Jin Z, Wang KK, Paun BC, Sampliner RE, Cheng Y, Washington K, Wallace MB, Mori Y, Zheng Y, Canto MI, Wang J Cancer Research 2009 19435894 \N \N
909 Estimation and Comparison of Receiver Operating Characteristic Curves. Longton G, Janes H, Pepe M The Stata journal 2009 20161343 \N \N
910 Psychosocial factors in risk of cervical intraepithelial lesions Bailey JM, Ruffin MT, Bieniasz ME, Wilkerson JE, Murray SI J Womens Health (Larchmt) 2009 19361319 \N \N
911 Characterization of the human cervical mucous proteome Panicker G, Ye Y, Wang D, Unger ER Clinical Proteomics 2010 20461121 \N \N
912 Integration of proteomics into systems biology of cancer Hanash S, Taguchi A, Zhang Q, Schliekelman M Wiley interdisciplinary reviews. Systems biology and medicine 2012 22407608 \N \N
913 Tumor microenvironment-derived proteins dominate the plasma proteome response during breast cancer induction and progression Buson TB, Gurley KE, Kennedy J, Zhang Q, Pitteri SJ, Hanash SM, Nelson PS, Kemp CJ, Wang H, Chin A, Wong CH, Chodosh LA, Kelly-Spratt KS Cancer research 2011 21653680 \N \N
914 Plasma proteome profiles associated with inflammation, angiogenesis, and cancer Liggitt D, Wong CH, Kelly-Spratt KS, Kemp CJ, Hanash SM, Zhang Q, Buson TB, Kennedy J, Pitteri SJ, Wang H, Chin A, Gurley KE PloS one 2011 21589862 \N \N
915 Lung cancer signatures in plasma based on proteome profiling of mouse tumor models Gazdar AF, Taguchi A, Dinulescu DM, Goodman G, Varmus HE, Depinho RA, Wong CH, Faça VM, Pitteri SJ, Zhang Q, Hanash SM, Kelly-Spratt K, Park KS, Kemp CJ, Politi K, Sage J, Kucherlapati R, Lockwood WW, Chin A Cancer cell 2011 21907921 \N \N
916 Targets of the tumor suppressor miR-200 in regulation of the epithelial-mesenchymal transition in cancer Schliekelman MJ, Kurie JM, Hanash SM, Ungewiss C, Shin DH, Wang H, Ahn YH, Gibbons DL, Creighton CJ, Wong CH, Zhang Q, Faca VM, Rizvi ZH Cancer research 2011 21987723 \N \N
917 Comprehensive proteomic profiling of aldehyde dehydrogenases in lung adenocarcinoma cell lines Schliekelman M, Misek DE, Zhang Q, Hanash S, Chin A, Taguchi A, Wong CH, Kuick R International journal of proteomics 2011 22110949 \N \N
918 Microparticles from ovarian carcinomas are shed into ascites and promote cell migration Goff BA, Reyes M, Pitteri SJ, Pennil C, Press JZ, Swisher EM, Garcia R, Hanash SM International journal of gynecological cancer : official journal of the International Gynecological Cancer Society 2012 22315094 \N \N
919 Concordant release of glycolysis proteins into the plasma preceding a diagnosis of ER+ breast cancer Hanash SM, McIntosh M, Prentice RL, Porter P, Disis M, Ladd JJ, Wong CH, Li CI, Lampe P, Pitteri SJ, Amon LM, Zhang Q Cancer research 2012 22367215 \N \N
920 Low-coherence enhanced backscattering: review of principles and applications for colon cancer screening. Wali RK, Liu Y, Subramanian H, Backman V, Roy HK, Pradhan P, Kim YL, Turzhitsky VM J Biomed Opt 2006 16965153 \N \N
923 Colon cancer screening: the good, the bad, and the ugly Backman V, Roy HK, Goldberg MJ Archives of Internal Medicine 2006 17101934 \N \N
924 Virtual Genome Scan: A Tool for Restriction Landmark Based Scanning of the Human Genome Muleris M., Erson A.E., Wimmer K., Kuick R., Rouillard J.M., Asakawa, and Hanash S, J., Petty E.M. Genome Research 2001 11483587 \N \N
925 Protein based microarrays: A tool for probing the proteome of cancer cells and tissues J, H, Hanash, Brichory, F, Madoz-Gurpide, Misek, Wang, SM, DE Proteomics 2001 11721639 \N \N
926 Integrating the predictiveness of a marker with its performance as a classifier Feng Z, Zheng Y, Prentice R, Longton G, Thompson IM, Pepe MS, Huang Y American Journal of Epidemiology 2008 17982157 \N \N
927 Mutational and deletion analyses of the chromosome 4q24-31 region in esophageal adenocarcinoma. Meltzer SJ., Hamilton JP, Wang S, Mori Y, Abraham JM, Berki A, Cai K, Sterian A, Schulmann K, Olaru A, Greenwald BD, Paun B, Kan T, Sato F Oncogene 2006 16837775 \N \N
928 Promoter hypermethylation and response to chemotherapy and radiation in esophageal cancer. Ito T, Abraham JM, Meltzer SJ., Mori Y, Sato F, Paun T, Berki AT, Wang S, Mantzur C, Doyle LA, Kan T, Suntharalingam M, Jin Z, Greenwald BD, Hamilton JP, Krasna MJ, Edelman MJ Clin. Gastroenterol. Hepatol. 2006 16678495 \N \N
929 Transcriptional profiling supports that Barrett's metaplasia is an advanced intermediate stage in esophageal adenocarcinoma. Chai K, Xu Y, Schulmann K, Hamilton JP, Sterian A, Greenwald BD and Meltzer SJ., Mori Y, Zhan M, Berki AT, Olaru A, Yin J, Deacu E, Li H, Abraham JM, Wang S, Kan T, Sato F Oncogene 2006 16449976 \N \N
930 Telomere length in the colon declines with age: relation to colorectal cancer? Reid B, Feng Z, Paulson TG, Norwood TH, Opheim K, Klingelhutz A, Palanca-Wessels MCA, Rabinovitch P Cancer Epidemiology, Biomarkers & Prevention 2006 16537718 \N \N
931 RAB32 hypermethylation and microsatellite instability in gastric and endometrial adenocarcinomas. Yin J, Karpeh MS, Sato F, Chung TKH, Wong YF, Meltzer SJ., Zhang L, Mori Y, Lo WK, Jr., Shibata D, Cai K, Elahi A, Hamelin R International Journal of Cancer 2006 16557577 \N \N
934 Reprimo methylation is a potential early biomarker of Barrett’s-associated neoplastic progression. Hamilton JP, Mori Y, Ito T, Sato F, Kan T, Meltzer SJ., Paun B, Wang S, Jin Z, Cheng Y, Abraham JM, Greenwald BD, Mantzur C Clinical Cancer Research 2006 17121882 \N \N
935 A genome-wide search identifies epigenetic silencing of somatostatin, tachykinin-1, and five other genes in colon cancer. Paun B, Wang S, Meltzer SJ., Abraham JM, Ito T, Mantzur C, Kan T, Jin Z, Mori Y, Cheng Y, Sato F, Hamilton JP, Cai K, Berki AT Gastroenterology 2006 16952549 \N \N
936 NF-kappaB in Lung Tumorigenesis. Tchou-Wong K-M, Cai Z, Rom WN, Cancers. 2011 N/A \N \N
937 Molecular analysis of plasma DNA for the early detection of lung cancer by quantitative methylation specific PCR David AG, Loyo M, Siegfried J, Hoque M, Greenberg A, Ostrow K, Bigbee W, Rom W, Brait M, Grandis J, Sidransky D. Clinical Cancer Research 2010 20592015 \N \N
939 Resection of non-small cell lung cancers reverses tumor-induced gene expression changes in the peripheral immune system. Kossenkov A, Billouin S, Albelda SM, Showe LC., Rom WN, Homg W, Vachani A, Chang C, Showe MK, Nichols C Clinical Cancer Research 2011 21807633 \N \N
940 Detection of lung cancer using weighted digital analysis of breath biomarkers. Kloss R, Pass HI, Altorki N, Cataneo RN, Phillips M, Schmitt P, Austin JHM, Rashid A, Cameron RB, Munawar MI, Wai J., Rom WN, Maxfield RA Clinica Chimica Acta 2008 18420034 \N \N
941 Performance of mitochondrial DNA mutations detecting early stage cancer. Maitra A, Barker PE, Rom WN, Jakupciak JP, Wagner PD, Maragh S, O'Connell CD., Markowitz ME, Srivastava S, Hoque MO, Sidransky D, Greenberg AD BMC Cancer 2008 18834532 \N \N
944 Update on ovarian cancer screening Chatterjee M, Munkarah A, Tainsky MA Curr Opin Obstet Gynecol. 2007 17218847 \N \N
945 Epitomics: global profiling of immune response to disease using protein microarrays Ionan A, Tainsky MA, Draghici S, Chatterjee M OMICS 2006 17233560 \N \N
946 Expression of nucleotide excision repair genes and the risk for squamous cell carcinoma of the head and neck Guo Z, Honn S, Eicher SA, Sturgis EM, Spitz MR, Guan Y, Cheng L, Wei Q Cancer 2002 11900225 \N \N
947 Gene Methylation and Early Detection of Genitourinary Cancer P, Cairns Nature Reviews Cancer 2007 17585333 \N \N
948 Multiplex analysis of serum cytokines in melanoma patients treated with interferon-alpha2b Kirkwood JM, Edington HD, Winans MT, Gorelik E, Yurkovetsky ZR, Velikokhatnaya L, Marrangoni AM, Lokshin AE Clinical Cancer Research 2007 17438101 \N \N
949 Multiple biomarker panels for early detection of ovarian cancer Yurkovetsky ZR, Lokshin AE, Linkov FY, E Malehorn D Future Oncology 2006 17155900 \N \N
950 Protein Microarray Signature of Autoantibody Biomarkers for the Early Detection of Breast Cancer Wallstrom G, Sibani S, Wagner MR, Ramachandran N, Godwin AK, Park JG, Lokko N, Marks J, Raphael J, Qiu J, Wong J, Anderson KS, LaBaer J, Engstrom P, Logvinenko T, Hainsworth E, Mendoza EA Journal of Proteome Research 2011 20977275 \N \N
952 MicroRNAs bind to Toll-like receptors to induce prometastatic inflammatory response. Wernicke F, Croce CM., Calore F, Gaudio E, Alder H, Lovat F, Santhanam R, Ozer GH, Fadda P, Zanesi N, Nana-Sinkam P, Fabbri M, Crawford M, Perrotti D, Galli R, Paone A PNAS 2012 22753494 \N \N
953 Monoclonal antibodies recognizing the non-tandem repeat regions of the human mucin MUC4 in pancreatic cancer Venkatraman G, Kumar S, Kaur S, Chakraborty S, Varshney GC, Batra SK, Jain M, Moniaux N PloS one 2011 21886786 \N \N
956 Marital status and survival in pancreatic cancer patients: a SEER based analysis Baine M, Chakraborty S, Batra SK, Sahak F, Lin C, Lyden E PloS one 2011 21698253 \N \N
957 The Author Replies to a Letter from Dr. Cook Pepe MS American Journal of Epidemiology 2011 N/A-not peer reviewed \N \N
958 Great promise of tissue-resident adult stem/progenitor cells in transplantation and cancer therapies Mimeault M, Batra SK Advances in experimental medicine and biology 2012 22457110 \N \N
959 Conditional estimation after a two-stage diagnostic biomarker study that allows early termination for futility Pepe MS, Koopmeiners JS, Feng Z Statistics in Medicine 2012 22238117 \N \N
961 Comparison of surgical and endoscopic sample collection for pancreatic cyst fluid biomarker identification Haab BB, Maupin KA, Simeone DM, Allen P, McDonald M, Brand R, Partyka K, Kwon R Journal of proteome research 2012 22439797 \N \N
963 Pathobiological implications of MUC16 expression in pancreatic cancer Das S, Wittel UA, Batra SK, Haridas D, Anderson JM, Hollingsworth MA, Ponnusamy MP, Chakraborty S, Cruz E, Kumar S, Lakshmanan I, Lele SM, Rachagani S PloS one 2011 22066010 \N \N
964 Assessment of fifty-four biomarkers for biopsy-detectable prostate cancer Baillargeon J, Lokshin A, Troyer DA, Thompson IM, Parekh DJ, Ankerts DP, Hernandez H, Leah RJ Cancer Epidemiology, Biomarkers & Prevention 2007 17932343 \N \N
965 Aberrant methylation during cervical carcinogenesis Zoechbauer-Mueller S, Virmani AK, Rathi A, Gazdar AF, Mathis M, Muller C Clinical Cancer Research 2001 11297252 \N \N
966 Aberrant methylation and simian virus 40 Tag sequences in malignant mesothelioma Maruyama R, Pass HI, Minna JD, Fukuyama Y, Farinas A, Gazdar AF, Gilcrease M, Toyooka S, Toyooka KO, Shivapurkar N Cancer Research 2001 11479207 \N \N
967 DNA methylation profiles of lung tumors Sugio K, Toyooka S, Miyajima K, Brambilla E, Gilcrease M, Girard L, Virmani AK., Harada K, Minna JD, Takahashi T, Gazdar AF, Ariyoshi Y, Toyooka KO, Maruyama R Molecular Cancer Therapeutics 2001 12467239 \N \N
968 Deletions of chromosome 4 occur early during the pathogenesis of colorectal carcinoma Gazdar AF, Maitra A, Milchgrub S, Shivapurkar N Human Pathology 2001 11230704 \N \N
969 Loss of expression and aberrant methylation of the CDH13 (H-cadherin) gene in breast and lung carcinomas Euhus DM, Toyooka S, Sathyanarayana UG, Toyooka KO, Gilcrease M, Minna JD, Gazdar AF, Virmani AK Cancer Research 2001 11389090 \N \N
971 Aberrant promoter methylation profile of bladder cancer and its relationship to clinicopathological features Virmani AK, Toyooka KO, Gazdar AF, Farinas AJ, Vakar-Lopez F, Toyooka S, Zochbauer-Muller S, Harada K, Sagalowsky A, Maruyama R, Minna JD, Czerniak B Cancer Research 2001 11751381 \N \N
973 Identification of an autoantibody panel to separate lung cancer from smokers and nonsmokers. Addrizzo-Harris D, Tan EM., Watson HN, Liu D, Khilkin M, Crawford B, Goldberg JD, Eylers E, Greenberg AK, Naidich DP, Rom WN BMC Cancer 2010 20504322 \N \N
975 Erectile dysfunction and subsequent cardiovascular disease Coltman CA, Probstfield JL, Thompson IM, Moinpour CM, Goodman PJ, Tangen CM JAMA : The Journal of the American Medical Association 2005 16414947 \N \N
976 Finasteride improves the sensitivity of digital rectal examination for prostate cancer detection Lucia MS, Lippman SM, Coltman CA, Tangen CM, Goodman PJ, Thompson IM, Parnes HL The Journal of Urology 2007 17437804 \N \N
977 Sequence specificity of Cr(III)-DNA adduct formation in the p53 gene: NGG sequences are preferential adduct-forming sites Rom W, Tang MS, Costa M, Wu F, Arakawa H Carcinogenesis 2006 16251206 \N \N
978 VDR and SRD5A2 polymorphisms combine to increase risk for prostate cancer in both non-Hispanic White and Hispanic White men Beuten J, Barón AE, van Bokhoven A, Mai P, Balic I, Byers TE, Thompson IM, Norris JM, Leach RJ, Hokanson JE, Torkko KC, Lucia MS Clinical Cancer Research : An Official Journal of the American Association for Cancer Research 2008 18483391 \N \N
980 An empirical evaluation of guidelines on prostate-specific antigen velocity in prostate cancer detection Till C, Lilja H, Thompson IM, Tangen CM, Vickers AJ Journal of the National Cancer Institute 2011 21350221 \N \N
1063 Up-regulation of 14-3-3Đ in Lung Cancer and its Implication as Prognostic and Therapeutic Target. Qiu Q, Li R, Todd NW, Zhao RY, Stass S, Katz R, Shen J, Wang H, Jiang F., Fang H-B, Caraway N, Fan T Cancer Research 2007 17699796 \N \N
981 SELDI-TOF-MS Whole Serum Proteomic Profiling With IMAC Surface Does Not Reliably Detect Prostate Cancer Zhang Z, Troyer D, Lin D, Wright GL, Malik G, Thompson IM, Thornquist M, McLerran D, Grizzle WE, Srivistava S, Sokoll L, Randolph T, Dahlgren J, Semmes J, Chan DW, Oelschlager D, Kagan J, Diaz J, Partin A, Zhu L, Feng Z, Bigbee WL, Cazares LH Clinical Chemistry 2008 18024530 \N \N
982 Using the ROC curve for gauging treatment effect in clinical trials Pepe MS, Brumback LC, Alonzo TA Statistics in Medicine 2006 16220481 \N \N
983 The sensitivity and specificity of markers for event times Pepe MS, Lumley T, Jenny N, Zheng Y, Cai T Biostatistics 2006 16079162 \N \N
984 Combining predictors for classification using the area under the ROC curve Cai T, Longton G, Pepe MS Biometrics 2006 16542249 \N \N
985 Assessing prostate cancer risk: results from the Prostate Cancer Prevention Trial Ankerst D, Goodman P, Parnes H, Lucia M, Coltman C, Tangen C, Feng Z, Chi C, Thompson I Journal of the National Cancer Institute 2006 16622122 \N \N
986 The optimal ratio of cases to controls for estimating the classification accuracy of a biomarker Janes H, Pepe M Biostatistics 2006 16428259 \N \N
987 FDR-controlling testing procedures and sample size determination for microarrays Potter J, Feng Z, Li S, Bigler J, Lampe J Statistics in Medicine 2006 15977294 \N \N
988 Application of the time-dependent ROC curves for prognostic accuracy with multiple biomarkers Cai T, Zheng Y, Feng Z Biometrics 2006 16542256 \N \N
989 Optimized normalization for antibody microarrays and application to serum-protein profiling Hamelinck D, Costa J, Z, Habb B, Feng, Zhou H, Dillon D, Verweij C, Li L Molecular and Cellular Proteomics 2005 15793073 \N \N
990 Aberrant promoter methylation profile of prostate cancers and its relationship to clinicopathological features Virmani AK, Gazdar AF, Farinas AJ, Zochbauer-Muller S, Maruyama R, Toyooka S, Minna JD, McConnell J, Toyooka KO, Frenkel EP Clinical Cancer Research 2002 14695140 \N \N
991 Presence of simian virus 40 DNA sequences in human lymphomas Harada K, Xu Y, Scheuermann RH, Kroft SH, Reddy J, Gazdar AF, McKenna RW, Shivapurkar N, Milchgrub S, Feng Z Lancet 2002 11897287 \N \N
992 Distinguishing Healthy Smokers from Head and Neck Cancer Adam BL, Cazares LH, Stack BC, Wright GL, Semmes OJ, Somers KD, Wadsworth JT Archives of Otolaryngology HN Surgery 2004 14732777 \N \N
993 The EDRN SELDI prostate cancer detection study: atudy in biomarker validation in GU oncology Feng Z, Grizzle W, Thompson I, Basler J, Izicka E, Srivastava S, Semmes OJ Urologic Oncology 2004 15283893 \N \N
994 Selective capture of prostatic basal cells and secretory epithelial cells for proteomic and genomic analysis. LH, Diaz JI, Corica A, Semmes OJ., Cazares Urologic Oncology 2004 15283892 \N \N
996 Focus on bladder cancer. Siefker-Radtke AO, McConkey DJ, Millikan RE, Adam L, Benedict WF, Bar-Eli M, Dinney CP, Kamat AM, Tuziak T, Wu X, and Czerniak B., Grossman HB, Sabichi AL Cancer Cell 2004 15324694 \N \N
997 Aberrant methylation of HIN-1 (high in normal-1) is a frequent event in many human malignancies. Fujisawa T, Mastrangelo D, Tomlinson GE, Pass HI, Toyooka S, Shigematsu H, Shimizu N, Suzuki M, Czerniak B, Takahashi T, Gazdar AF., Sathyanarayana UG, Shivapurkar N, Miyajima K, Brambilla E International Journal of Cancer 2005 15472908 \N \N
998 Specific chromosome aberrations in peripheral blood lymphocytes are associated with risk of bladder cancer. Lerner SL, Bondaruk J, Shao L, Wu X., Spitz MR, Czerniak BA, Grossman HB, Zeng X Genes, Chromosomes & Cancer 2004 15390184 \N \N
1000 Alterations in transcription clusters underlie development of bladder cancer along papillary and nonpapillary pathways. Hu L, Czerniak B., Wang Z, Kim MS, Zhang W, Grossman HB, Kim JH, Baggerly K, Bondaruk J, Tuziak T, Fuller G, Dinney C Laboratory Investigation 2005 15778693 \N \N
1001 High-resolution whole-organ mapping with SNPs and its significance to early events in carcinogenesis. Jeong J, Yoon DS, Johnston D, Kuang TC, Kim MS, Majewski T, Wang Z, Tuziak T, Baggerly K, Czerniak B., Steinberg J Laboratory Investigation 2005 15908911 \N \N
1002 Aberrant promoter methylation and silencing of laminin-5-encoding genes in breast carcinoma Sathyanarayana UG, Padar A, Shigematsu H, Suzuki M, Huang CX, Bekele BN and Gazdar AF Clinical Cancer Research 2003 14695139 \N \N
1003 DNA methylation profiles of lymphoid and hematopietic malignancies Takahashi T, Miyajima K, Feng Z, Kroft SH, Parikh G, Suzuki M, McKenna RW and Gazdar AF, Zochbauer-Muller S, Drach J, Zheng Y, Reddy J, Shigematsu H, Toyooka S, Shivapurkar N, Timmons C Clinical Cancer Research 2004 15131027 \N \N
1004 Aberrant methylation of TRAIL decoy receptors is frequent in multiple tumor types Toyooka S, Miyajima K, Parikh G, Suzuki M, Reddy J, Pass HI, Shigematsu H, Takahashi T, Shivapurkar N, Chaudhary PM and Gazdar AF, Toyooka KO International Journal of Cancer 2004 14999791 \N \N
1005 Lung cancer: chemoprevention and intermediate effect markers Tockman MS IARC Sci Publ 2001 11220665 \N \N
1006 Aberrant methylation of TMS1 in small cell, non-small cell lung cancer and breast cancer Rathi A, Kischel FC, Toyooka S, Minna JD, Virmani A, Padar A, Sathanarayana UG, Takahashi T, Euhus DM, Gazdar AF, Roth JA, Sugio K, Tonk V International Journal of Cancer 2003 12800194 \N \N
1007 Efficacy of Two Sputum Collection Techniques in Patients with Air Flow Obstruction. ACTA Cytologica Piantadosi S, Kennedy TC, Petty TL, Proudfoot SP, Wu L, Tockman MS, Saccomanno G ACTA Cytologica 1999 10432886 \N \N
1008 Considerations in developing successful, population-based molecular screening lung cancer. Cancer Mulshine JL, Webster R, Dedrick RL, Tockman MS, Placke ME, De Luca LM Cancer 2000 11147628 \N \N
1010 Mutations and addiction to EGFR - the Achilles "heal" of lung cancers? Herz J, Minna JD, Gazdar AF, Shigematsu H Trends Mol Med 2004 15464447 \N \N
1011 Lynch syndrome: Genetics, natural history, genetic counseling, and prevention Lynch JF, Lynch HT Journal of Clinical Oncology 2000 11060321 \N \N
1012 Optimization of MALDI/TOF MS detection for enhanced sensitivity of affinity-captured proteins spanning a 100 kDa mass range Cazares L, Semmes OJ Malyarenko DI, CL, Gatlin-Bunai, Cooke WF Journal of Proteome Research 2007 17918874 \N \N
1015 Signal detection in high-resolution mass spectrometry data. Semmes OJ, McLerran DF, Randolph T, Feng Z, Cazares L Journal of Proteome Research 2008 18173224 \N \N
1016 Phosphorylation of MUC1 by MET modulates interaction with p53 and MMP1 expression Eggers JP, Cerny RL, Bailey JM, Gendler SJ, Hollingsworth MA, Shanmugam K, Behrens ME, Bennett EP, Singh PK The Journal of Biological Chemistry 2008 18625714 \N \N
1017 ADH-1 suppresses N-cadherin-dependent pancreatic cancer progression Shintani, Hollingsworth, K, PM, Grandgenett, Wheelock, Chaika, Y, MA, N, Fukumoto, Johnson, MJ International Journal of Cancer 2008 17721921 \N \N
1093 Structured penalties for functional linear models — partially empirical eigenvectors for regression Feng Z, Randolph T, Harezlak J Electronic Journal of Statistics 2012 22639702 \N \N
1021 Epidermal growth factor receptor messenger RNA expression, gene dosage, and gefitinib sensitivity in non-small cell lung cancer. R., F. Cappuzzo, K. Tanaka, P. A. Bunn Jr, M. Varella-Garcia, S. E. Witta, A. E. Baron, L. Crino, K. D. Danenberg, S. Park, Dziadziuszko, W. A. Franklin, P. V. Danenberg, and F. R. Hirsch. Clinical Cancer Research 2006 16707605 \N \N
1022 Optimization of SELDI-TOF profiling for analysis of cervical mucous Lee DR, Unger ER, Panicker G Journal of Proteomics 2009 19064004 \N \N
1023 Hypermethylation of the Pendred syndrome gene SLC26A4 is an early event in thyroid tumorigenesis Ladenson,PW, Sidransky,D, Xing,M, Tokumaru,Y, Westra,WB, Wu,G Cancer Research 2003 12727855 \N \N
1024 Electrophile and oxidant damage of mitochondrial DNA leading to rapid evolution of homoplasmic mutations Guo,Z, Mambo,E, Talalay,P, Sidransky,D, Gao,X, Cohen,Y Proc National Acad Sci USA 2003 12578990 \N \N
1025 Profiling the cell surface proteome JH and Hanash S, Jang Proteomics 2003 14625857 \N \N
1026 Prediction of ovarian cancer prognosis and response to chemotherapy by a serum-based multiparametric Model Oikonomopoulou K, Zheng Y, Simickova M, Simon I, Li L, Valik D, Nekulova M, Wolfert R, Frgala T and Diamandis E British Journal of Cancer 2008 18766180 \N \N
1027 Evaluation of the branched-chain DNA assay for measurement of RNA in formalin-fixed tissues Maqsodi B, Allen AN, Vessella RL, Karademos J, Davies JE, McMaster GK, Kristal AR, Knudsen GS, McLerran DF Journal of Molecular Diagnostics 2008 18310059 \N \N
1028 EGFR-mutant lung adenocarcinoma in a patient with Li-Fraumeni syndrome. R. McFarlane, W. A. Robinson, Bemis, K. Kelly, E. Buyers, L. T., J. D. Mitchell, and W. A. Franklin., M. Varella-Garcia Lancet Oncology 2007 17540308 \N \N
1029 Death-associated protein kinase promoter hypermethlation in normal human lymphocytes Kim,M, Benoit,N, Sidransky,D, Clinger,J, Reddy,AN, Jiang,WW, Taylor,R, Califano,J Cancer Research 2003 14633692 \N \N
1031 Statistical Aspects of the Use of Biomarkers in Nutritional Epidemiology Research Beresford SA, Prentice RL, Neuhouser ML, Tinker LF, Huang Y, Lampe JW Statistics in Biosciences 2009 19841649 \N \N
1032 Detecting genomic aberrations using products in a multiscale analysis Yu X, Tang H, Randolph TW, Hsu L Biometrics 2010 19817738 \N \N
1033 Association of serum phospholipid fatty acids with breast cancer risk among postmenopausal cigarette smokers King IB, Takata Y, Goodman GE, Neuhouser ML, Schaffer S, Barnett M, Peters U, Thornquist M Cancer Causes & Control 2009 19255861 \N \N
1034 A Protein Microarray Signature of Autoantibody Biomarkers for the Early Detection of Breast Cancer Engstrom P, and LaBaer J., Ramachandran N, Wallstrom G, Anderson KS, Qiu J, Godwin A, Montor W, Hainsworth E, Marks J, Sibani S, Wong J, Raphael, Lokko N, Mendoza E, J Journal of Proteome Research 2011 20977275 \N \N
1035 Statistical issues in the evaluation of screening and early detection modalities Etzioni R Urologic Oncology 2008 18452826 \N \N
1036 Contrasting two frameworks for ROC analysis of ordinal ratings Pepe MS, Morris DE, Barlow WE Medical Decision Making 2010 20147599 \N \N
1037 Measures to Summarize and Compare the Predictive Capacity of Markers Gu W, Pepe M The international journal of biostatistics 2009 20224632 \N \N
1039 Hepatitis B virus-mediated changes of apolipoprotein mRNA abundace in cultured hepatoma cells Mehta AS, Norton PA, Lu X and Block TM, Gong Q Journal of Virology 2003 12692252 \N \N
1040 Gene amplification in esophageal adenocarcinomas and Barrett’s adenocarcinomas with high grade dysplasia Moy JR, Beer DG, Orringer MB, Iannetoni MD, Schipper M, Normolle D, Miller CT, Lin L, Brenner DE Clinical Cancer Research 2003 14581353 \N \N
1041 Clinical implications and utility of field cancerization Birch-Machin MA, Jakupciak JP, Dakubo GD, Parr RL Cancer Cell International 2007 17362521 \N \N
1042 The pseudo-mitochondrial genome influences mistakes in heteroplasmy interpretation Thayer RE, Jakupciak JP, Robinson K, Aguirre A, Parr RL, Dakubo GD, Reguly B, Wittock R, Maki J BMC Genomics 2006 16859552 \N \N
1044 Lectin capture strategies combined with mass spectrometry for the discovery of serum glycoprotein biomarkers Schwegler EE, Block TM, Drake R, Malik G, Diaz J, Mehta AS and Semmes OJ Molecular and Cellular Proteomics 2006 16760258 \N \N
1045 Proteomic analysis of serum associated fucosylated glycoproteins in the development of primary hepatocellular carcinoma Long RE, Lowman, Comunale MA, Block TM and Mehta AS, Philip R, Krakover J, Evans AA, Hann HW, MA, Seeholzer S Journal of Proteome Research 2006 16457596 \N \N
1048 Molecular virology of hepatitis B virus for clinicians Guo H and Guo J-T, Block TM Disease Markers 2007 17981225 \N \N
1050 Development of natural protein microarray for diagnosing cancer based on antibody response to tumor antigens Madoz-Gurpide J, Misek DE, Michailidis G, Hanash S, Haab BB, Qiu J, Kuick R, Brenner DE, Omenn GS J Proteome Res 2004 15113102 \N \N
1051 Emerging molecular biomarkers--blood-based strategies to detect and monitor cancer Baik CS, Kallioniemi O, Hanash SM Nature reviews. Clinical oncology 2011 21364687 \N \N
1052 Harnessing the immune response for cancer detection Hanash S Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2011 21454417 \N \N
1053 The sentinel within: exploiting the immune system for cancer biomarkers LaBaer J, Anderson KS Journal of Proteome Research 2005 16083262 \N \N
1054 Next-generation high-density self-assembling functional protein arrays Hu Y, Ramachandran N, Demirkan G, Fuentes MG, LaBaer J, Rolfs A, Hainsworth E, Raphael JV Nature methods 2008 18469824 \N \N
1055 Applications of protein microarrays for biomarker discovery Srivastava S, Labaer J, Ramachandran N Proteomics. Clinical applications 2008 21136793 \N \N
1056 Autoantibody profiles as biomarkers of breast cancer Lv LL, Anderson KS, Tabernero MD Cancer biomarkers : section A of Disease markers 2010 20938085 \N \N
1057 Tumor vaccines for breast cancer Anderson KS Cancer investigation 2009 19358018 \N \N
1058 Rapid detection of antibodies in sera using multiplexed self-assembling bead arrays LaBaer J, Sibani S, Anderson KS, Lokko NN, Wong J Journal of immunological methods 2009 19732778 \N \N
1059 p53 autoantibodies as potential detection and prognostic biomarkers in serous ovarian cancer Wong J, Sluss PM, Cramer D, Labaer J, Crum CP, Anderson KS, Vitonis A Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2010 20200435 \N \N
1062 Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice Omenn, Brichory, Kuick, Misek, FM, Rouillard, Creighton, R, S, Rickman, C, JM, DS, DE, GS and Hanash Genome Biology 2003 12844362 \N \N
1064 Gene expression profiles predict survival of pateints with lung adenocarcinoma Chen, S, Beer, R, Thomas, MB and Hanash, Huang, Giordano, Hayasaka, TJ, Iannettoni, DG, MD, DE, C-C, TG, Kardia, Misek, JMG, L, G, SLR, AM, Kuick, Taylor, Lizyness, Levin, Orringer, Lin, Gharib, ML Nature Medicine 2002 12118244 \N \N
1065 Global and specific translational control by rapamycin in T cells uncovered by microarray and proteomics Pradet-Balade, L, J, JA and Beretta, Garcia-Sanz, Hanash, A, B, E, S, Grolleau, Bowman, Puravs Journal of Biological Chemistry 2002 11943782 \N \N
1066 Discordant protein and mRNA expression in lung adenocarcinomas Orringer, G, DG, Huang, Gharib, Chen, Taylor, MB, SM and Beer, JM, TJ Iannettoni, TG, MD, Kardia, CC, Misek, DE, Hanash, SL and Giordano Molecular and Cellular Proteomics 2002 12096112 \N \N
1067 A lung cancer protein database E., Puravs, Oh, Tra, J., F., Beer, Brichory, D. and Hanash S Proteomics 2001 11721642 \N \N
1069 Gene expression patterns define pathways correlated with loss of differentiation in lung adenocarcinomas S and Beer, D, Creighton, C, Hanash FEBS Letters 2003 12681502 \N \N
1070 Mining gene expression databases for assocation rules C and Hanash, Creighton, S Bioinformatics 2003 12499296 \N \N
1071 Global profiling of the cell surface proteome of cancer cells uncovers an abundance of proteins with chaperone function Tra, Brichory, Jang, Shin, Puravs, F, R, D and Hanash, Michael, Yim, Le Naour, Wang, S, E, C, H, J, A, B, Misek, Zhao Journal of Biological Chemistry 2002 12493773 \N \N
1072 ProMAT: Protein Microarray Analysis Tool Varnum SM, Anderson KK, Zangar RC, Bollinger N, White AM, Daly DS Bioinformatics 2006 16595561 \N \N
1073 Advancing ELISA microarray technology into a high-throughput system for cancer biomarker validation. White, Zangar RC, AM, Daly DS Expert Rev. Proteomics 2006 16445349 \N \N
1074 Polymorphisms, Mutations, and Amplification of the EGFR Gene in Non-Small Cell Lung Cancers Shay JW, Estess P, Kato H, Wistuba II, Siegelman M, Takahashi T, Suzuki M, Feng Z, Shigematsu H, Gazdar AF, Marchetti A, Nomura M, Li L, Spitz MR, Minna JD PLOS Med 2007 17455987 \N \N
1075 Polymorphisms, Mutations, and Amplification of the EGFR Gene in Non-Small Cell Lung Cancers Wistuba II, Estess P, Gazdar AF, Takahashi T, Minna JD, Shay JW, Marchetti A, Suzuki M, Kato H, Shigematsu H, Nomura M, Spitz MR, Feng Z, Li L, Siegelman M PLOS Med 2007 17455987 \N \N
1076 Scale-based normalization of spectral data Randolph T Disease Markers 2006 17192066 \N \N
1077 SELDI-TOF-MS Whole Serum Proteomic Profiling With IMAC Surface Does Not Reliably Detect Prostate Cancer Oelschlager D, Wright GL, Srivistava S, Lin D, Zhu L, Partin A, Chan DW, Malik G, Thompson IM, Zhang Z, Bigbee WL, Cazares LH, Troyer D, Dahlgren J, Thornquist M, Kagan J, Semmes J, Grizzle WE, Diaz J, Feng Z, Randolph T, McLerran D, Sokoll L Clinical Chemistry 2008 18024530 \N \N
1078 SELDI-TOF-MS Whole Serum Proteomic Profiling With IMAC Surface Does Not Reliably Detect Prostate Cancer Cazares LH, Sokoll L, Partin A, Troyer D, Wright GL, Randolph T, Chan DW, Thornquist M, Kagan J, Diaz J, Srivistava S, Thompson IM, Zhu L, Bigbee WL, Grizzle WE, Feng Z, Malik G, Lin D, Semmes J, Zhang Z, Dahlgren J, Oelschlager D, McLerran D Clinical Chemistry 2008 18024530 \N \N
1079 Estimating the capacity for improvement in risk prediction with a marker Gu W, Pepe MS Biostatistics 2009 18714084 \N \N
1080 SELDI-TOF-MS Whole Serum Proteomic Profiling With IMAC Surface Does Not Reliably Detect Prostate Cancer Troyer D, Zhu L, Dahlgren J, Diaz J, Grizzle WE, Randolph T, Chan DW, Sokoll L, Bigbee WL, Malik G, Srivistava S, Zhang Z, Thornquist M, Kagan J, Cazares LH, Wright GL, Lin D, Thompson IM, Oelschlager D, Semmes J, Feng Z, McLerran D, Partin A Clinical Chemistry 2008 18024530 \N \N
1081 SELDI-TOF-MS Whole Serum Proteomic Profiling With IMAC Surface Does Not Reliably Detect Prostate Cancer Randolph T, Dahlgren J, Thornquist M, Kagan J, Semmes J, Lin D, Zhu L, Oelschlager D, Bigbee WL, Wright GL, Diaz J, Zhang Z, Srivistava S, Partin A, Malik G, Cazares LH, McLerran D, Chan DW, Grizzle WE, Feng Z, Troyer D, Thompson IM, Sokoll L Clinical Chemistry 2008 18024530 \N \N
1082 SELDI-TOF-MS Whole Serum Proteomic Profiling With IMAC Surface Does Not Reliably Detect Prostate Cancer Cazares LH, Lin D, Zhang Z, Randolph T, Zhu L, Wright GL, Srivistava S, Semmes J, Chan DW, Thornquist M, Grizzle WE, McLerran D, Kagan J, Bigbee WL, Oelschlager D, Sokoll L, Feng Z, Partin A, Thompson IM, Diaz J, Malik G, Dahlgren J, Troyer D Clinical Chemistry 2008 18024530 \N \N
1083 SELDI-TOF-MS Whole Serum Proteomic Profiling With IMAC Surface Does Not Reliably Detect Prostate Cancer Feng Z, Malik G, Diaz J, McLerran D, Srivistava S, Lin D, Chan DW, Cazares LH, Grizzle WE, Kagan J, Dahlgren J, Randolph T, Wright GL, Partin A, Semmes J, Thornquist M, Zhu L, Oelschlager D, Troyer D, Zhang Z, Bigbee WL, Sokoll L, Thompson IM Clinical Chemistry 2008 18024530 \N \N
1084 Effect of CpG methylation at different sequence context on acrolein-and BPDE-DNA binding and mutagenesis. Chung FL, Weng MW, Wang HT, Wu XR, Pan J, Tang MS., Rom W, Chen WC, Yobin M Carcinogenesis 2013 23042304 \N \N
1085 Variant Cizl is a circulating biomarker for early-stage lung cancer. IJ, Watson, Ainscough JFX, Higgins G, Coverley D., Rom WN, Roper KM, Pass HI, Blackhall FH Proc Nat'l Acad Science 2012 23074256 \N \N
1087 Fibulin-3 as a blood and effusion biomarker for pleural mesothelioma Carbone M, Levin SM, Chia D, Goodman GE, de Perrot M, Thornquist MD, Huflejt M, Goparaju C, Pass HI, Chiriboga L, Melamed J, Goodglick L, Harbut MR, Liu G, Donington J, Tsao MS The New England journal of medicine 2012 23050525 \N \N
1088 Prostate cancer cell phenotypes based on AGR2 and CD10 expression True LD, Corey E, Goodglick L, Dumpit R, Mah V, Maresh EL, Kim SR, Ho ME, Bagryanova L, Morrissey C, Nelson PS, Liu AY, Chia D, Horvath S, Alavi M, Quek SI, Vessella RL Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 2013 23348903 \N \N
1089 Cigarette smoke induces methylation of the tumor suppressor gene NISCH. Mohammed., David; Hoque, Rafael; Greenberg, William; Sidransky, Alissa; Rom, Kimberly; Michailidi, Christina; Guerrero-Preston, Ostrow Epigenetics 2013 23503203 \N \N
1090 Expression of phosphorylated raf kinase inhibitor protein (pRKIP) is a predictor of lung cancer survival Maresh EL, Chia D, Rivera-Pazos CM, Chatterjee D, Yoon NK, Hernandez-Cueto A, Vega MI, Huerta-Yepez S, Mah V, Goodglick L, Bonavida B, Horvath S BMC cancer 2011 21689459 \N \N
1091 Na,K-ATPase is a target of cigarette smoke and reduced expression predicts poor patient outcome of smokers with lung cancer Wu DC, Sampson VB, Chia D, Rajasekaran AK, Mah V, Fishbein MC, Langhans SA, Sarafian T, Alavi M, Harper J, Dubinett SM, Huynh TP, Horvath S, Goodglick L American journal of physiology. Lung cellular and molecular physiology 2012 22345575 \N \N
1092 Humoral response profiling reveals pathways to prostate cancer progression. Wei JT, Chinnaiyan AM, Laxman B, Sreekumar A, Nesvizhskii AI, Kalyana-Sundaram S, Pal M, Ghosh D, Yu J, Menon A, Taylor BS, Omenn GS, Lubman DM, Zhao R Molecular and Cellular Proteomics 2008 18077443 \N \N
1094 Statistical methods for analyzing tissue images---algorithmic scoring and co-training Linden M, Wang P, Yan D, Randolph T, Knudsen B Annals of Applied Statistics 2012 22984376 \N \N
1095 Bioinformatics: Biomarkers of early detection Crichton DJ, Anton K, Mattmann CA, Hughes JS, Thornquist M Cancer biomarkers : section A of Disease markers 2011 22112493 \N \N
1096 Cruciferous vegetable supplementation in a controlled diet study alters the serum peptidome in a GSTM1-genotype dependent manner Randolph TW, Chen C, Lampe JW, Brauer HA, Mitchell BL, Lampe PD, Yasui YY, Li L, Libby TE Nutrition Journal 2011 21272319 \N \N
1097 Problems with risk reclassification methods for evaluating prediction models Pepe MS American Journal of Epidemiology 2011 21555714 \N \N
1098 Commentary: Reporting standards are needed for evaluations of risk reclassification Janes H, Pepe MS International journal of epidemiology 2011 21571811 \N \N
1099 Assessing Treatment-Selection Markers using a Potential Outcomes Framework Janes H, Huang Y, Gilbert PB Biometrics 2012 22299708 \N \N
1100 Efficient use of longitudinal CD4 counts and viral load measures in survival analysis Ding J, Baeten JM, Overbaugh J, Tien J, Randolph TW, Holte SE, McClelland RS Statistics in Medicine 2012 22415871 \N \N
1101 Quantifying LC-MS/MS data by ion abundance and spectral count: two case studies Milac T, Randolph T, Wang P Statistics and Its Interface 2012 24163717 \N \N
1102 Prevalidation of salivary biomarkers for oral cancer detection Abemayor E, Wong DT, Lingen M, Randolph T, Zhou H, Feng Z, Xiao H, Akin D, Sinha U, Hu S, Chia D, Reiss J, Wang J, Elashoff D, Kastratovic DA, Nabili V, Morris D, Arellano M, Le A, Henson B, Messadi D, Wang M Cancer Epidemiology, Biomarkers & Prevention 2012 22301830 \N \N
1103 Higher levels of GATA3 predict better survival in women with breast cancer. Goodglick L., Apple S, Horvath S, Maresh EL, Elshimali Y, Yoon NK, Mah V, Chia D, Shen D, Chang HR, Bose S Human Pathology 2010 21078439 \N \N
1104 Differential expression of anterior gradient gene AGR2 in prostate cancer. Liu AY, Horvath S, Maresh EL, Chia D, Zhou Y, Alavi M, Liebeskind ES, Bagryanova L, Knutzen LA, Goodglick L., Mah V BMC Cancer. 2010 21144054 \N \N
1105 Higher expression levels of 14-3-3sigma in ductal carcinoma in situ of the breast predict poorer outcome. Seligson DB, Mah V, Maresh E, Goodglick L., Bose S, Sulur G, Elshimali Y, Li A, Bonavida B, Yoon NK, Horvath S, Chia D Cancer Biomark 2009 19729831 \N \N
1106 Snail promotes CXCR2 ligand-dependent tumor progression in non-small cell lung carcinoma. Goodglick L, Hong L, Yanagawa J, Dubinett SM., Sharma S, Mah V, Strieter RM, Magyar CE, Fishbein MC, Chia D, Lee JM, Luo J, Walser TC, Elashoff DA, St John MA, Dohadwala M, Zhu LX Clinical Cancer Research 2009 19887480 \N \N
1107 Elevated MED28 expression predicts poor outcome in women with breast cancer. Elshimali Y, Yoon NK, Goodglick L., Maresh EL, Chia D, Li A, Horvath S, Seligson DB BMC Cancer. 2009 20584319 \N \N
1109 Unlocking biomarker discovery: Large scale application of aptamer proteomic technology for early detection of lunc cancer. and Brody EN., Ostroff RM, Rom WN, Siegfried JM, Gold L, Weissfeld JL, Stewart A, Williams S, Pass HI, Walker JJ, Bigbee WL, Franklin W, Mehan M, Miller YE, Zichi D PLoS ONE 2010 2010 21170350 \N \N
1111 Global Levels of Histone Modifications Predict Prognosis in Different Cancers. McBrian MA, Tze S, Yu H, Seligson DB, Horvath S, Goodglick L, Wang Q, Mah V, Kurdistani SK., Chia D American Journal of Pathology 2009 19349354 \N \N
1113 Analysis of genetic and epigenetic alterations of the PTEN gene in gastric cancer Meltzer SJ, Sakata K, Usuba O, Motoyama T, Zou T, Sato K, Endoh Y, Tsuchiya T, Kimura W, Terashima M, Nishizuka S, Tamura G Virchows Archiv 2002 11964046 \N \N
1114 Artificial neural networks distinguish among subtypes of neoplastic colorectal lesions Zou T, Harpaz N, Wang S, Leytin A, Abraham JM, Yin J, Liu TC, Sato F, Xu Y, Mori Y, Selaru F, Twigg C, Shibata D, Meltzer SJ, Olaru A Gastroenterology 2002 11874992 \N \N
1115 Hypermethylation of the p14<sup>ARF</sup> gene in ulcerative colitis-associated colorectal carcinogenesis Yin J, Selaru F, Zou T-T, Sato F, Leytin A, Meltzer SJ, Wang S, Xu Y, Harpaz N, Shibata D, Mori Y, Desai K, Abraham JM Cancer Research 2002 11861396 \N \N
1116 Global gene expression profiling in Barrett’s esophagus and esophageal cancer: a comparative analysis using cDNA microarrays Wang S, Meltzer SJ, Selaru F, Sato F, Mori Y, Greenwald BD, Abraham JM, Xu Y, Yin J, Shustova V, Zou T, Krasna MJ Oncogene 2002 11821959 \N \N
1117 Application of cDNA microarrays to generate a molecular taxonomy capable of distinguishing between colon cancer and normal colon Sato F, Shustova V, Zou T, Meltzer SJ, Selaru F, Liu TC, Mori Y, Yin J, Xu Y, Abraham JM Oncogene 2002 12101425 \N \N
1118 Aberrant methylation of the CDH13 (H-cadherin) promoter region in colorectal cancers and adenomas Toyooka KO, Meltzer SJ, Harada K, Sato F, Shivapurkar N, Makarla P, Miyajima K, Gazdar AF, Sathyanarayana UG, Yin J, Toyooka S Cancer Research 2002 12067979 \N \N
1120 Activation of the Esophagin Promoter during Esophageal Epithelial Cell Differentiation Abraham JM, Souza RF, Meltzer SJ, Fleisher AS, Smolinski KN, Kong D, Wang S, Zou T-T, Yin J Genomics 2002 12036303 \N \N
1121 Genetic modeling of human urinary bladder carcinogenesis Ro JY, Johnston DA, Logothetis C, Li L*, von Eschenbach AC, Chaturvedi V, Czerniak B Genes, Chromosomes & Cancer 2000 10719370 \N \N
1122 Instabilotyping reveals novel unique mutational spectra in microsatellite-unstable gastric cancers Leggett B, Selaru M, Matsubara N, Olaru A, Abraham JM, Xu Y, Perry K, Stine OC, Zou T-T, Sato F, Young J, Meltzer SJ*, Kimos MC, Yin J, Mori Y, Wang S, Tamura G, Shibata D, Nukiwa T Cancer Research 2002 12097267 \N \N
1123 Defining the role of mass spectrometry in cancer diagnostics Semmes OJ Cancer Epidemiology, Biomarkers & Prevention 2004 15466969 \N \N
1124 Measurement reproducibility in the early stages of biomarker development Liggett WS, Barker PE, Cazares LH, Semmes OJ Disease Markers 2004 15665389 \N \N
1125 SELDI-TOF serum profiling for prognostic and diagnostic classifiication of breast cancers Laronga C, Semmes OJ, Becker S, Cazares L, Drake R Disease Markers 2004 15258337 \N \N
1126 Expression of genes and proteins specific for prostate cancer Semmes OJ, Gelman E Journal of Urology 2004 15535438 \N \N
1128 Validation of SELDI-TOF Protein Profiling for Identification of Prostate Cancer Conrads TP, Ahang Z, Thornquist MD, Srivastavas, Semmes OJ, Johnsey D, Verma M, Grizzle W, Thompson I, Bigbe WL, Kagan J, Jendoubi M, McCarthy DB, Carroll C, Zou Z, Feng Z, Leach RJ, Adam BL, Izbecka E Disease Markers 2004 15258333 \N \N
1130 Semi-parametric estimation of time dependent ROC curves for longitudinal marker data Heagerty P., Zheng Y Biostatistics 2004 15475423 \N \N
1131 Design of studies to compare accuracy of tests for detecting presence of disease Moskowitz C., Alonzo T, Pepe MS Statistics in Medicine 2002 11870820 \N \N
1132 A data-analytic strategy for protein-biomarker discovery: profiling of high-dimensional proteomic data for cancer detection Adam B-L, Wright G Jr, Winget M, Pepe M, Thornquist M, Qu Y, Feng Z, Yasui Y, Potter JD, Thompson ML Biostatistics 2003 12925511 \N \N
1133 An automated peak-identification / calibration procedure for high-dimensional protein measures from mass spectrometers Adam B-L, Thornquist M, McLerran D, Winget M, Feng Z, Yasui Y Journal of Biomedicine and Biotechnology 2003 14615632 \N \N
1134 Selecting differentially expressed genes from microarray experiments Longton G, Pepe MS, Schummer M, Anderson G Biometrics 2003 12762450 \N \N
1135 Factors Influencing Serum CA125II Levels in Healthy Postmenopausal Women Skates SJ, McIntosh M, Symecko HL, Pauler DK, Jacobs IJ, Menon U Cancer Epidemiology, Biomarkers & Prevention 2001 11352859 \N \N
1136 Screening Based on the Risk of Cancer Calculation from Bayesian Hierarchical Change-Point Models of Longitudinal Markers Pauler DK, Skates SJ, Jacobs IJ Journal of the American Statistical Association 2001 N/A \N \N
1137 Mitotic phosphorylation of histone H3: Spatio-temporal regulation by mammalian Aurora kinases Kimura M, David Allis C, Sasson-Corsi P, Maria Fimia G, Zhou H, Okano Y, Loury R, Sen S, Crosio C Molecular and Cellular Biology 2002 11784863 \N \N
1138 Genetic variation in CYP19A1 and risk of breast cancer and fibrocystic breast conditions among women in Shanghai, China Fish S, Lin MG, Ray RM, Loomis MM, Zhao LP, Gao DL, Doherty JA, Stalsberg H, Chen C, Fan W, Feng Z, Sakoda LC, Thomas DB Cancer Epidemiology, Biomarkers & Prevention 2008 19064562 \N \N
1139 Assessing the Diagnostic Accuracy of a Sequence of Tests Thompson ML Biostatistics 2003 12925502 \N \N
1140 Smoke exposure, histologic type and geography related differences in the methylation profiles of non-small cell lung cancer Roth J, Minna J, Fukuyama Y, Zochbauer-Muller S, Shimizu K, Lee H, Toyooka K, Maruyama R, Shimizu N, Sugio K, McLerran D, Virmani A, Gilcrease M, Fong K, Gazdar A, Chen C, Feng Z, Tsukuda K, Toyuooka S International Journal of Cancer 2003 12455028 \N \N
1141 Bridging the gap. An ELISA microarray platform for validating cancer biomarkers. Zangar, R.C. BIOforum Europe 2006 N/A \N \N
1143 Evaluation of surface chemistries for antibody microarrays. Baird, R.C., Rodland, S.L., A.M., Seurynck-Servoss, White, and Zangar, C.L., K.D. Anal. Biochem. 2007 17718996 \N \N
1144 Gender and lung cancer J, Rom WN, Gasperino Clin Lung Cancer 2004 15217534 \N \N
1145 Bias-reduced estimators and confidence intervals for odds ratios in genome-wide association studies Zhong H and Prentice RL Biostatistics 2008 18310059 \N \N
1146 Biomarker evaluation using the controls as a reference population Huang Y, Pepe MS Biostatistics 2009 18755739 \N \N
1147 Gauging the performance of SNPs, biomarkers and clinical factors for predicting risk of breast cancer (editorial) Pepe MS, Janes HE Journal of the National Cancer Institute 2008 18612128 \N \N
1148 Pivotal evaluation of the accuracy of a biomarker used for classification or prediction: Standards for study design Janes H, Pepe MS, Bossuyt P and Potter J, Feng Z Journal of the National Cancer Institute 2008 18840817 \N \N
1149 Evaluating the ROC performance of markers for future events Levy W, Pepe MS, Zheng Y, Jin Y, Parikh C, Huang Y Lifetime Data Analysis 2008 18064569 \N \N
1150 A Multiparametric serum Kallikrein panel for diagnosis of non-small cell Lung Carcinoma Planque C, Chia D, Li L, Reckamp K, Diamandis E and Goodglick L, Zheng Y, Soosaipillai A Clinical Cancer Research 2008 18316555 \N \N
1151 Glutathione S-transferase M1 and P1 polymorphisms and risk of breast cancer and fibrocystic breast conditions in Chinese women Doherty J, Sakoda L, Thomas D, Ray R, Chen C, Lin M, Gao D, Stalsberg H, Xue K, Blackston C, Feng Z Breast Cancer Research and Treatment 2008 17624589 \N \N
1152 Three-Tiered Risk Stratification Model to Predict Progression in Barrett's Esophagus Using Epigenetic and Clinical Features Wu T-T, Greenwald BD, Yfantis HG, Fredericksen MB, Hamilton JP, Paun B, Cheng Y, Abraham JM, Schulmann K, Feng Z, Wang J, Kan T, David S, Mori Y, Olaru A, Yang J, Sato F, Wang KK, Romero Y, Ito T, Canto M, Jin Z, Meltzer SJ PLoS ONE 2008 18382671 \N \N
1153 Time-dependent predictive values of prognostic biomarkers with failure time outcome Pepe MS, WC, Levy, Zheng Y, Cai T Journal of the American Statistical Association 2008 19655041 \N \N
1154 Recruitment to multicentre trials -- lessons from UKCTOCS: descriptive study. Ryan A, Menon U, Oram D, McGuire A, Skates S, Williamson K, Murdoch J, Herod J, Campbell S, Mould T, Dobbs S, Cruickshank D, Woolas R, Hallett R, Gentry-Maharaj A, Lopez A, Lewis S, Sharma A, Jacobs I, Amso N, Seif M, Parmar M, Burnell M, Fallowfield L, Godfrey K, Leeson S, Scott I British Medical Journal 2008 19008269 \N \N
1155 Identification of epithelial cell adhesion molecule autoantibody in patients with ovarian cancer Mok SC, Feltmate CM, Wong KK, Berkowitz RS, Uede T, Schorge JO, Cramer DW, Kim JH, Skates SJ Clinical Cancer Research 2003 14581349 \N \N
1156 Semiparametric methods for evaluating risk prediction markers in case-control studies Huang Y, Pepe MS Biometrika 2009 22822247 \N \N
1158 The use of multiple novel tumor biomarkers for the detection of ovarian carcinoma in patients with a pelvic mass Brown AK, Jr, Moore RG, Steinhoff M, Allard WJ, Miller MC, Bast RC, Skates S, Granai CO, Verch T, DiSilvestro P, Messerlian G Gynecologic Oncology 2008 18061248 \N \N
1159 Prospective Accuracy for Longitudinal Markers Heagerty P, Zheng, Y Biometrics 2007 17688486 \N \N
1160 Insights into latent class analysis of diagnostic test performance Janes H, Pepe MS Biostatistics 2007 17085745 \N \N
1161 Application of a methylation gene panel by quantitative PCR for lung cancers Suzuki M, Shivapukar N, Feng Z, Thunnissen F, Stastny V, Gazdar A, Prinsen C, Hol B, Li L, Zheng Y, Wistuba I Cancer Letters 2007 16644104 \N \N
1162 Polymorphisms, Mutations, and Amplification of the EGFR Gene in Non-Small Cell Lung Cancers Takahashi T, Estess P, Minna JD, Shay JW, Siegelman M, Nomura M, Li L, Marchetti A, Spitz MR, Kato H, and Gazdar AF, Feng Z, Wistuba II, Shigematsu H, Suzuki M PLOS Med 2007 17455987 \N \N
1164 Evaluating the predictiveness of a continuous marker Pepe MS, Huang Y, and Feng Z Biometrics 2007 17489968 \N \N
1165 Matching in studies of classification accuracy: Implications for analysis, efficiency, and assessment of incremental value Janes H, Pepe MS Biometrics 2008 17501939 \N \N
1166 Optimal use of a panel of methylation markers with GSTP1 hypermethylation in the diagnosis of prostate adenocarcinoma Sun,DI, Epstein,JI, Harden,SV, Tokumaru,Y, Yamashita,K, Sidransky,D Clinical Cancer Research 2004 15328191 \N \N
1168 Quantitative RARbeta2 hypermethylation: a promising prostate cancer marker Oliveira,J, Teixeira,MR, Sidransky,D, Jeronimo,C, Henrique,R, Hoque,MO, Fonseca,D, Ribeiro,FR, Lopes,C Clinical Cancer Research 2004 15217932 \N \N
1170 Quantitative GSTP1 methylation levels correlate with Gleason grade and tumor volume in prostate needle biopsies Sidransky,D, Tokumaru,Y, Epstein,JI, Zhou,M The Journal of Urology 2004 15126784 \N \N
1171 Detecting cervical cancer by quantitative promoter hypermethylation assay on cervical scrapings: a feasibility study Buikema,HJ, Cohen,Y, Tokumaru,CY, Dong,SM, Wisman,GB, Sidransky,D, Suurmeijer,AJ, Hollema,H, Klip,HG, van derZee,AG, Reesink-Peters,N, Boezen,HM, Jeronimo,C Mol Cancer Res 2004 15192122 \N \N
1172 Detection of promoter hypermethylation of multiple genes in the tumor and bronchoalveolar lavage of patients with lung cancer Lee,J, Moon,CS, Ratovitski,E, Topaloglu,O, Hoque,MO, Sidransky,D, Tokumaru,Y Clinical Cancer Research 2004 15073103 \N \N
1173 The Human MitoChip: a high-throughput sequencing microarray for mitochondrial mutation detection Hoque,MO, Califano,J, Sidransky,D, Maitra A, Shah,N, Mambo,E, Fukushima,N, Cohen,Y, Gillespie,SE, Chakravarti,A, Goggins,M Genome Res 2004 15123581 \N \N
1174 Detection of LOH and mitochondrial DNA alterations in ductal lavage and nipple aspirate fluids from high risk patients Liu,M, Singh,B, Pennanen,M, Haddad,BR, Sidransky,D, Shankar,LK, Rone,JD, Gallagher,A, Isaacs,C, Cavalli,LR, Freedman,M, Cohen,Y, Dickerson,RB Breast Cancer Res Treat 2004 14999140 \N \N
1175 Aspects of the design and analysis of high-dimensional SNP studies for disease risk estimation Prentice RL and Qi L Biostatistics 2006 16443924 \N \N
1176 Sample size and analysis for paired study designs comparing the predictive values of binary diagnostic tests Moskowitz CS, Pepe MS Clinical Trials 2006 16895044 \N \N
1177 Combining Results of Microarray Experiments: A Rank Aggregation Approach Clegg N, Hawley S, Falcon S, Etzioni R, DeConde RP Statistical Applications in Genetics and Molecular Biology 2006 17049026 \N \N
1179 Distinctive serum protein profiles involving abundant proteins in lung cancer patients based upon antibody microarray analysis Orchekowski RP, Hanash SM, Greenberg AK, Brenner DE, Haab BB, Rom WN, Kuick R, Omenn GS, WM, Misek DE, Qiu J, Gao BMC Cancer 2005 16117833 \N \N
1180 Quantitative Analysis of Acrylamide Labeled Serum Proteins by LC-MS/MS Coram M, McIntosh M, Zhang Q, Fitzgibbon M, Faca V, Glukhova V, Phanstiel D, Hanash S Journal of Proteome Research 2006 16889424 \N \N
1181 Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study Fermin D, Hanash SM, Omenn GS, Eng J, Speicher DW, States DJ, Blackwell TW Nature Biotechnology 2006 16525410 \N \N
1182 MicroRNA dysregulation in cancer: diagnostics, monitoring and therapeutics. A comprehensive review Iorio MV, Croce CM EMBO molecular medicine 2012 22351564 \N \N
1183 Causes and consequences of microRNA dysregulation Croce CM, Iorio MV Cancer journal (Sudbury, Mass.) 2012 22647357 \N \N
1184 MicroRNA-1 is a candidate tumor suppressor and prognostic marker in human prostate cancer Borin JF, Esposito D, Watkins SK, Hudson RS, Naslund MJ, Stephens RM, Alexander RB, Yi M, Lee DH, Yfantis HG, Dorsey TH, Ambs S, Croce CM, Hurwitz AA Nucleic acids research 2012 22210864 \N \N
1186 microRNA involvement in human cancer Iorio MV, Croce CM Carcinogenesis 2012 22491715 \N \N
1187 miR-EdiTar: a database of predicted A-to-I edited miRNA target sites Russo F, Pulvirenti A, Cascione L, Gasparini P, Shasha D, Giugno R, Macca V, Ferro A, Veneziano D, Nigita G, Paone A, Carasi S, Laganà A, Croce CM Bioinformatics (Oxford, England) 2012 23044546 \N \N
1188 MiR-494 is regulated by ERK1/2 and modulates TRAIL-induced apoptosis in non-small-cell lung cancer through BIM down-regulation Romano G, Croce CM, Bolon B, Acunzo M, Condorelli G, Cascione L, Zanca C, Di Leva G, Garofalo M Proceedings of the National Academy of Sciences of the United States of America 2012 23012423 \N \N
1189 miRNAs in precancerous lesions of the gastrointestinal tract Fassan M, Croce CM, Rugge M World journal of gastroenterology : WJG 2011 22219591 \N \N
1190 miRNAs in the spotlight: Understanding cancer gene dependency Croce CM Nature medicine 2011 21818092 \N \N
1192 Classification versus association models: should the same methods apply? Feng Z Scandinavian Journal of Clinical and Laboratory Investigation. Supplementum 2010 20515278 \N \N
1193 Boosting with missing predictors Feng Z, Wang CY Biostatistics 2010 19948743 \N \N
1194 Glycosylation variants of mucins and CEACAMs as candidate biomarkers for the diagnosis of pancreatic cystic neoplasms Barnes D, Yue T, Haab BB, Anderson MA, Scheiman J, Simeone DM, Porter A, Feng Z, Li L, Schmidt CM Annals of Surgery 2010 20395854 \N \N
1196 Ulcerative colitis-associated colorectal cancer arises in a field of short telomeres, senescence, and inflammation Brentnall TA, Rabinovitch PS, Feng Z, Lai LA, Risques RA, Al-Lahham B, Kowdley KV, Himmetoglu C, Bronner MP, Li L, Ebaee A, Lindor KD Cancer Research 2011 21363920 \N \N
1197 Canary Prostate Active Surveillance Study: design of a multi-institutional active surveillance cohort and biorepository Feng Z, Brooks JD, Newcomb LF, Lin DW, Nelson PS, Thompson IM, Gleave ME, Carroll PR Urology 2010 19758683 \N \N
1198 Borrowing information across populations in estimating postive and negative predictive values Fong Y, Huang Y, Wei J, Feng Z Journal of Royal Statistical Society, Series C 2011 22021938 \N \N
1199 Assessing risk prediction models in case-control studies using semiparametric and nonparametric methods Pepe MS, Huang Y Statistics in Medicine 2010 20527013 \N \N
1200 Multifocal lung cancers - clonality vesus field cancerization and does it matter? Minna JD, Gazdar AF Journal of the National Cancer Institute 2009 19351914 \N \N
1201 Investigation of complement activation product c3d as a diagnostic and prognostic biomarker for lung cancer Torre W, Jantus-Lewintre E, Camps C, Corrales L, de-Torres JP, Pajares MJ, Perez-Garcia JL, Montuega LM, Agorreta J, Lozano MD, Ajona D, Pio R, Zulueta JJ, Massion PP J Natl Cancer Inst 2013 23940286 \N \N
1202 Identification of Androgen-regulated Genes by Serial Analysis of Gene Expression and Proteomic Analysis Hanash, Waghray, Feroze, Schober, S and Chen YQ, F, E, C, Puravs, A, Wood, Yao, M, Krause Proteomics 2001 11721644 \N \N
1203 Two messenger RNAs and five isoforms for Po66-CBP, a galectin-8 homolog in a human lung carcinoma cell line Bourguet P, Hanash S, Dazord L, Brichory F, Le Pennec J, Bidon N Gene 2001 11675018 \N \N
1204 Proteomics-based identification of RS/DJ-1 as a novel circulating tumor antigen in breast cancer Le Naour F, Deneux L, Giordano TJ, Misek DE, Krause MC, and Hanash SM Clinical Cancer Research 2001 11705844 \N \N
1205 Differential Methylation of a Short CpG-Rich Sequence within Exon 1 of TCF21 Gene: A Promising Cancer Biomarker Assay Thunnissen FB, Stastny V, Prinsen C, Xie Y, Minna JD, Czerniak B, Frenkel E, Shivapurkar N, Gazdar AF Cancer Epidemiology, Biomarkers & Prevention 2008 18398044 \N \N
1285 Integrating the predictiveness of a marker with its performance as a classifier Thompson IM, Longton G, Prentice R, Feng Z, Huang Y, Pepe MS, Zheng Y American Journal of Epidemiology 2008 17982157 \N \N
1206 Understanding the development of human bladder cancer by using a whole-organ genomic mapping strategy Shen L, Majewski T, Jeong J, Johnston DA, Czerniak B., Wu XF, McConkey DJ, Grossman HB, Yoon DS, Tang KS, Gazdar A, Bar-Eli M, Kim MS, Filipek S, Lee S, Narod SA, Bondaruk J, Scherer SE, Issa JP, Harris RA, Tuziak T, Ahmed SS, Baggerly K, Dinney CP, Chung W, Lynch HT, Watson P, Snyder C, Zhou JH, Kram A, Benedict WF, Park WS Laboratory Investigation 2008 18458673 \N \N
1207 A blood-based proteomic classifier for the molecular characterization of pulmonary nodules Butler H, Law S, Massion PP, Hayward C, Gingras O, Lamontagne J, McLean M, Rom WN, Kearney P, Li XJ, Dominguez M, Allard R, Lam S, Schirm M, Hood L, Vachani A, Chelsky D, Hunsucker SW, Pass H, Lee LW, Fong PY, Fang KC, Price ND Sci Transl Med 2013 24132637 \N \N
1208 Proteomic analysis of cytokeratin isoforms uncovers association with survival in lung adenocarcinoma Hanash S and Beer DG, Giordano TJ, Yee J, Huang C-C, Wang H, Gharib TG, Chen G, Taylor JMG, Orringer MB, Shedden K, Thomas DG, Prescott MS, Misek DE, Kardia S Neoplasia 2002 12192603 \N \N
1209 A distinct repertoire of autoantibodies in hepatocellular carcinoma identified by proteomic analysis Le Naour F, Hanash SM and Beretta L, Brechot C, Misek DE, Brichory F Molecular and Cellular Proteomics 2002 12096119 \N \N
1210 Cytoglobin, the newest member of the globin family, functions as a tumor suppressor gene Wistuba, Czerniak B, Field JK, Xinarianos G, Minna JD, Shivapurkar N, Stastny V, Xie Y, Liloglou T, Roth JA, Okumura N, Girard L, II, Gazdar AF, Prinsen C, Thunnissen FB, Frenkel E Cancer Research 2008 18794132 \N \N
1211 Predictors of contralateral prophylactic mastectomy in women with a BRCA1 or BRCA2 mutation Manoukian S, Ghadirian P, Lynch H, Domchek S, Weitzel J, Moller P, Lubinski J, Friedman E, Gronwald J, Isaacs C, Kim-Sung C, Sun P, Tung N, Narod SA, Wagner T, Foulkes WD, Ainsworth P, Metcalfe KA, Cummings S, Hereditary Breast Cancer Clinical Study Group Journal of Clinical Oncology 2008 18195327 \N \N
1212 Serum MMP-2 and TIMP-2 Expression in Ovarian Cancer Graves LE, Stack MS, Matzel H, Fishman DA, Rademaker AW Cancer 2002 N/A \N \N
1214 Activation of MAPKs ERK1/2 in Ovarian Derived Cell Lines Stack S, Santiago JY, Fishman DA, Woodruff TK, Dunn MH, Roberson M The Journal of Biological Chemistry 2002 N/A \N \N
1215 In silico estimates of tissue components in surgical samples based on expression profiling data Sawyers A, Xia XQ, McClelland M, Mercola D, Jia Z, Wang-Rodriquez J, Yao H, Wang Y Cancer research 2010 20663908 \N \N
1216 Sputum-Based Molecular Biomarkers for the Early Detection of Lung Cancer; Limitations and Promise. Rom WN., Kim CE, Tchou-Wong KM Cancers 2011 2011 24212941 \N \N
1218 Mutator activity induced by miR-155 links inflammation and cancer. Wernicke D, Michaillea J-J, Volinia S and Croce CM., Costinean S, Tili E, Alder H Proc. Nat. Acad. Sci, USA 2011 21383199 \N \N
1219 Mutated beta-catenin evades a microRNA dependent regulatory loop. D’Abbundo L, Visone R, Negrini M, Ferracin M, Bolondi L, Veronese A, Gramantieri L, Miotto E, Lovat F, Croce CM., Perrotti D, Kim T, Consiglio J, Acunzo M, Balatti V, Lupini L, Pekarsky Y Proc. Nat. Acad. Sci, USA 2011 21383185 \N \N
1220 MicroRNAs: master regulators as potential therapeutics in cancer Garofalo M, Croce CM. Annual Review Toxicology and Pharmacology 2011 20809797 \N \N
1221 MicroRNA-21 (miR-21) induces resistance to 5-fluorouracil by down-regulating human DNA MutS homolog 2 (hMSH2) Valeri N, Fabbri M, Lovat F, Alder H, Braconi C, Fishel R and Croce CM., Nuovo GJ, Paone A, Amadori D, Sumani KM, Gasparini P, Patel T Proc. Nat. Acad. Sci, USA 2010 21078976 \N \N
1222 CpG island hypermethylation-associated silencing of non-coding RNAs transcribed from ultraconserved regions in human cancer. Rossi S, Portela A, Spizzo R, Esteller M., Croce CM, Melo SA, Lujambio A, Calin GA, Liz J Oncogene 2010 20802525 \N \N
1223 Adopting nested case-control quota sampling designs for the evaluation of risk markers Cai T, Zheng Y, Pepe MS Lifetime Data Analysis 2013 23807695 \N \N
1225 The risk of biopsy-detectable prostate cancer using the prostate cancer prevention Trial Risk Calculator in a community setting Thompson IM, Feng Z, Stanford JL, Liang Y, Ankerst DP, Fu R Urologic Oncology 2013 22552047 \N \N
1226 Pro-surfactant protein B as a biomarker for lung cancer prediction Sin DD, Barnett MJ, Tammemagi CM, Goodman GE, Auman H, Feng Z, Taguchi A, Tam A, Hanash S, Duan X, Lam S Journal of Clinical Oncology 2013 24248694 \N \N
1228 Aberrant expression of mucin core proteins and o-linked glycans associated with progression of pancreatic cancer Mandel U, Lazenby AJ, Wandall HH, DiMaio DJ, Anderson JM, Remmers N, Linde EM, Hollingsworth MA, Clausen H, Yu F Clinical cancer research : an official journal of the American Association for Cancer Research 2013 23446997 \N \N