From 89600d2a91947219c452e2c50a8834a63d02cc00 Mon Sep 17 00:00:00 2001 From: nstarman Date: Wed, 10 Dec 2025 00:00:32 -0500 Subject: [PATCH 1/3] =?UTF-8?q?=F0=9F=91=B7=20build:=20update=20nox?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Signed-off-by: nstarman --- .github/workflows/cd.yml | 1 + .github/workflows/ci.yml | 37 ++++--- .pre-commit-config.yaml | 16 +-- noxfile.py | 85 ++++++++------- pyproject.toml | 92 +++++++++------- src/diffraxtra/_src/diffeq_abc.py | 4 +- uv.lock | 173 +++++++++++++++++++++++++++++- 7 files changed, 297 insertions(+), 111 deletions(-) diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml index 5eb6cac..ca9bb51 100644 --- a/.github/workflows/cd.yml +++ b/.github/workflows/cd.yml @@ -29,6 +29,7 @@ jobs: - uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5.0.0 with: fetch-depth: 0 + persist-credentials: false - uses: hynek/build-and-inspect-python-package@efb823f52190ad02594531168b7a2d5790e66516 # v2.14.0 diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 06bdfc0..3252aa5 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -28,14 +28,13 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2 - - name: Install the project - run: uv sync --group nox + - name: Install + run: uv sync --no-default-groups --group nox --group lint --locked - - uses: pre-commit/action@2c7b3805fd2a0fd8c1884dcaebf91fc102a13ecd # v3.0.1 - with: - extra_args: --hook-stage manual --all-files + - name: Lint + run: uv run --frozen nox -s lint - checks: + tests: name: Check Python ${{ matrix.python-version }} on ${{ matrix.runs-on }} runs-on: ${{ matrix.runs-on }} needs: [format] @@ -53,10 +52,12 @@ jobs: with: python-version: ${{ matrix.python-version }} - - name: Run tests - run: >- - uv run --group test pytest --cov --cov-report=xml --cov-report=term - --durations=20 + - name: Install + run: uv sync --no-default-groups --group nox --group test --locked + + - name: Test package + run: | + uv run --frozen nox -s test -- --cov --cov-report=xml --cov-report=term --durations=20 - name: Upload coverage report uses: codecov/codecov-action@5a1091511ad55cbe89839c7260b706298ca349f7 # v5.5.1 @@ -82,11 +83,21 @@ jobs: python-version: ${{ matrix.python-version }} - name: Run tests - run: >- - uv run --group test --resolution lowest pytest --cov --cov-report=xml - --cov-report=term --durations=20 + run: | + uv run --group test --resolution lowest pytest --cov --cov-report=xml --cov-report=term --durations=20 - name: Upload coverage report uses: codecov/codecov-action@5a1091511ad55cbe89839c7260b706298ca349f7 # v5.5.1 with: token: ${{ secrets.CODECOV_TOKEN }} + + status: + name: CI Pass + runs-on: ubuntu-latest + needs: [format, tests, check_oldest] + if: always() + steps: + - name: All required jobs passed + uses: re-actors/alls-green@release/v1 + with: + jobs: ${{ toJSON(needs) }} diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 387f594..e74fb02 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -50,24 +50,12 @@ repos: args: ["--fix", "--show-fixes"] - id: ruff-format - - repo: https://github.com/pre-commit/mirrors-mypy - rev: "v1.18.2" - hooks: - - id: mypy - files: src - args: [] - additional_dependencies: - - diffrax - - equinox - - jaxtyping - - numpy - - plum-dispatch - - repo: https://github.com/codespell-project/codespell rev: "v2.4.1" hooks: - id: codespell - args: [--skip=uv.lock] + args: ["--toml", "pyproject.toml"] + additional_dependencies: ["tomli"] - repo: https://github.com/shellcheck-py/shellcheck-py rev: "v0.11.0.1" diff --git a/noxfile.py b/noxfile.py index fce00e5..7f0a630 100644 --- a/noxfile.py +++ b/noxfile.py @@ -1,73 +1,78 @@ -"""Nox configuration.""" +"""Nox setup.""" import shutil from pathlib import Path import nox +from nox_uv import session + +nox.needs_version = ">=2024.3.2" +nox.options.default_venv_backend = "uv" DIR = Path(__file__).parent.resolve() -nox.needs_version = ">=2024.3.2" -nox.options.sessions = ["lint", "tests"] -nox.options.default_venv_backend = "uv|virtualenv" +# ============================================================================= +# Check -@nox.session -def check(session: nox.Session, /) -> None: +@session(reuse_venv=True) +def check(s: nox.Session, /) -> None: """Run all checks.""" - lint(session) - test(session) + lint(s) + test(s) # ============================================================================= +# Linting -@nox.session -def lint(session: nox.Session, /) -> None: +@session(uv_groups=["lint"], reuse_venv=True) +def lint(s: nox.Session, /) -> None: """Run the linter.""" - precommit(session) - pylint(session) + s.notify("precommit") + s.notify("pylint") + s.notify("mypy") -@nox.session -def precommit(session: nox.Session, /) -> None: +@session(uv_groups=["lint"], reuse_venv=True) +def precommit(s: nox.Session, /) -> None: """Run the pre-commit hooks.""" - session.run( - "uv", - "run", - "pre-commit", - "run", - "--all-files", - "--show-diff-on-failure", - *session.posargs, - ) - - -@nox.session -def pylint(session: nox.Session, /) -> None: + s.run("pre-commit", "run", "--all-files", *s.posargs) + + +@session(uv_groups=["lint"], reuse_venv=True) +def pylint(s: nox.Session, /) -> None: """Run PyLint.""" - # This needs to be installed into the package environment, and is slower - # than a pre-commit check - session.run("uv", "sync", "--group", "lint") - session.run("uv", "run", "pylint", "src", *session.posargs) + s.run("pylint", "src", *s.posargs) + + +@session(uv_groups=["lint"], reuse_venv=True) +def mypy(s: nox.Session, /) -> None: + """Run mypy.""" + s.run("mypy", "src", *s.posargs) # ============================================================================= # Testing -@nox.session -def test(session: nox.Session, /) -> None: +@session(uv_groups=["test"], reuse_venv=True) +def test(s: nox.Session, /) -> None: + """Run the tests.""" + s.notify("pytest", posargs=s.posargs) + + +@session(uv_groups=["test"], reuse_venv=True) +def pytest(s: nox.Session, /) -> None: """Run the tests.""" - session.run("uv", "sync", "--group", "test") - session.run("uv", "run", "pytest", *session.posargs) + s.run("pytest", *s.posargs) # ============================================================================= # Packaging -@nox.session +@session(uv_groups=["build"]) def rm_build(_: nox.Session, /) -> None: """Remove the build directory.""" build_path = DIR.joinpath("build") @@ -75,8 +80,8 @@ def rm_build(_: nox.Session, /) -> None: shutil.rmtree(build_path) -@nox.session -def build(session: nox.Session, /) -> None: +@session(uv_groups=["build"]) +def build(s: nox.Session, /) -> None: """Build an SDist and wheel.""" - rm_build(session) - session.run("uv", "build", *session.posargs) + rm_build(s) + s.run("python", "-m", "build") diff --git a/pyproject.toml b/pyproject.toml index 1492a40..8c354fd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -47,16 +47,22 @@ dev = [ "ipykernel>=6.29.5", "cz-conventional-gitmoji>=0.6.1", + {include-group = "build"}, {include-group = "lint"}, {include-group = "nox"}, {include-group = "test"}, ] +build = [ + "build>=1.3.0", +] lint = [ - "pre-commit>=4.1.0", - "pylint>=3.3.8", + "mypy>=1.19.0", + "pre-commit>=4.1.0", + "pylint>=3.3.8", ] nox = [ - "nox>=2024.10.9", + "nox>=2024.10.9", + "nox-uv>=0.6.3", ] test = [ "attrs>=25.3.0", @@ -72,33 +78,12 @@ version.source = "vcs" build.hooks.vcs.version-file = "src/diffraxtra/_version.py" -[tool.commitizen] -name = "cz_gitmoji" +[tool.codespell] +skip = ["uv.lock"] -[tool.pytest.ini_options] -minversion = "8.3" -addopts = [ - "--showlocals", - "--strict-config", - "--strict-markers", - "-p no:doctest", # using sybil - "-ra", -] -xfail_strict = true -filterwarnings = [ - "error", - "ignore:jax.core.Primitive is deprecated:DeprecationWarning", - "ignore:jax.core.pp_eqn_rules is deprecated:DeprecationWarning", - # Equinox 0.11.5 & Jax 0.4.35 - "ignore:jax.interpreters.batching.NotMapped is deprecated:DeprecationWarning", -] -log_cli_level = "INFO" -testpaths = ["README.md", "src/", "tests/"] -norecursedirs = [ - ".*", # ignores .hypothesis, .git, etc. - "__pycache__" -] +[tool.commitizen] +name = "cz_gitmoji" [tool.coverage] @@ -129,6 +114,44 @@ ignore_missing_imports = true module = ["plum.*"] +[tool.pylint] +py-version = "3.11" +ignore-paths = [".*/_version.py"] +reports.output-format = "colorized" +similarities.ignore-imports = "yes" +disable = [ + "fixme", + "function-redefined", # incompatible with plum-dispatch + "line-too-long", # handled by ruff + "no-member", # handled by mypy +] + + +[tool.pytest.ini_options] +minversion = "8.3" +addopts = [ + "--showlocals", + "--strict-config", + "--strict-markers", + "-p no:doctest", # using sybil + "-ra", +] +xfail_strict = true +filterwarnings = [ + "error", + "ignore:jax.core.Primitive is deprecated:DeprecationWarning", + "ignore:jax.core.pp_eqn_rules is deprecated:DeprecationWarning", + # Equinox 0.11.5 & Jax 0.4.35 + "ignore:jax.interpreters.batching.NotMapped is deprecated:DeprecationWarning", +] +log_cli_level = "INFO" +testpaths = ["README.md", "src/", "tests/"] +norecursedirs = [ + ".*", # ignores .hypothesis, .git, etc. + "__pycache__" +] + + [tool.ruff] src = ["src"] @@ -168,19 +191,6 @@ src = ["src"] "numpy" = "np" -[tool.pylint] -py-version = "3.11" -ignore-paths = [".*/_version.py"] -reports.output-format = "colorized" -similarities.ignore-imports = "yes" -disable = [ - "fixme", - "function-redefined", # incompatible with plum-dispatch - "line-too-long", # handled by ruff - "no-member", # handled by mypy -] - - [tool.uv] constraint-dependencies = [ # Because IPyKernel doesn't constrain its dependencies diff --git a/src/diffraxtra/_src/diffeq_abc.py b/src/diffraxtra/_src/diffeq_abc.py index 83cd733..9097207 100644 --- a/src/diffraxtra/_src/diffeq_abc.py +++ b/src/diffraxtra/_src/diffeq_abc.py @@ -36,7 +36,7 @@ default_throw = params["throw"].default -class AbstractDiffEqSolver(eqx.Module, strict=True): +class AbstractDiffEqSolver(eqx.Module): """Class-based interface for solving differential equations. This is a convenience wrapper around `diffrax.diffeqsolve`, allowing for @@ -177,7 +177,7 @@ def from_( # ========================================================== -@AbstractDiffEqSolver.__call__.dispatch # type: ignore[attr-defined,misc] +@AbstractDiffEqSolver.__call__.dispatch # type: ignore[attr-defined,untyped-decorator] @ft.partial(eqx.filter_jit) def call(self: "AbstractDiffEqSolver", terms: Any, /, **kwargs: Any) -> dfx.Solution: """Solve a differential equation, with keyword arguments.""" diff --git a/uv.lock b/uv.lock index 62894f4..9311193 100644 --- a/uv.lock +++ b/uv.lock @@ -82,6 +82,20 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/94/31/87045d1c66ee10a52486c9d2047bc69f00f2689f69401bb1e998afb4b205/beartype-0.21.0-py3-none-any.whl", hash = "sha256:b6a1bd56c72f31b0a496a36cc55df6e2f475db166ad07fa4acc7e74f4c7f34c0", size = 1191340 }, ] +[[package]] +name = "build" +version = "1.3.0" +source = { registry = "https://pypi.org/simple" } +dependencies = [ + { name = "colorama", marker = "os_name == 'nt'" }, + { name = "packaging" }, + { name = "pyproject-hooks" }, +] +sdist = { url = "https://files.pythonhosted.org/packages/25/1c/23e33405a7c9eac261dff640926b8b5adaed6a6eb3e1767d441ed611d0c0/build-1.3.0.tar.gz", hash = "sha256:698edd0ea270bde950f53aed21f3a0135672206f3911e0176261a31e0e07b397", size = 48544 } +wheels = [ + { url = "https://files.pythonhosted.org/packages/cb/8c/2b30c12155ad8de0cf641d76a8b396a16d2c36bc6d50b621a62b7c4567c1/build-1.3.0-py3-none-any.whl", hash = "sha256:7145f0b5061ba90a1500d60bd1b13ca0a8a4cebdd0cc16ed8adf1c0e739f43b4", size = 23382 }, +] + [[package]] name = "cffi" version = "1.17.1" @@ -415,11 +429,17 @@ dependencies = [ ] [package.dev-dependencies] +build = [ + { name = "build" }, +] dev = [ { name = "attrs" }, + { name = "build" }, { name = "cz-conventional-gitmoji" }, { name = "ipykernel" }, + { name = "mypy" }, { name = "nox" }, + { name = "nox-uv" }, { name = "pre-commit" }, { name = "pylint" }, { name = "pytest" 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