From 26bc400b7a487bf9a93b99932e6f25a511e1164b Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 11:51:24 -0400 Subject: [PATCH 01/18] WIP --- CMakeLists.txt | 5 + Makefile | 33 ++ python/.python-version | 1 + python/CMakeLists.txt | 36 +++ python/README.md | 1 + python/nanobind/main.cpp | 127 ++++++++ python/pyproject.toml | 45 +++ python/test/test_bindings.py | 122 ++++++++ python/tguf/__init__.py | 3 + python/uv.lock | 579 +++++++++++++++++++++++++++++++++++ 10 files changed, 952 insertions(+) create mode 100644 python/.python-version create mode 100644 python/CMakeLists.txt create mode 100644 python/README.md create mode 100644 python/nanobind/main.cpp create mode 100644 python/pyproject.toml create mode 100644 python/test/test_bindings.py create mode 100644 python/tguf/__init__.py create mode 100644 python/uv.lock diff --git a/CMakeLists.txt b/CMakeLists.txt index a0becba..54d037c 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -9,6 +9,7 @@ project( option(TGN_BUILD_TESTS "Build test binaries" OFF) option(TGN_BUILD_EXAMPLES "Build example binaries" OFF) option(TGN_BUILD_TOOLS "Build tool binaries" OFF) +option(TGN_BUILD_PYTHON "Build Python Bindings" OFF) set(CMAKE_EXPORT_COMPILE_COMMANDS ON) set(CMAKE_CXX_STANDARD 20) @@ -90,6 +91,10 @@ if (TGN_BUILD_TOOLS) add_subdirectory(tools/tguf_cli) endif() +if (TGN_BUILD_PYTHON) + add_subdirectory(python) +endif() + if (TGN_BUILD_TESTS) enable_testing() diff --git a/Makefile b/Makefile index e450565..fbdeaf3 100644 --- a/Makefile +++ b/Makefile @@ -42,6 +42,11 @@ help: @echo "" @echo "Data Targets:" @echo " make download- - Download TGB dataset (e.g., make download-tgbl-wiki)" + @echo "" + @echo "Python Targets:" + @echo " make python - Build and install Python bindings" + @echo " make test-python - Run Python-specific tests" + @echo " make clean-python - Run Python-specific build artifacts" @echo "========================================================================" $(BUILD_DIR)/CMakeCache.txt: @@ -124,6 +129,34 @@ perf-node-%: profile-build data/%.tguf download-%: data/%.tguf @echo "Dataset $* is up to date." + +TGN_LIB_DIR := $(shell find python/build -name "libtgn.so" -exec dirname {} \; | head -n 1) +PYTHON_SO_DIR := $(shell find python/build -name "_core*.so" -exec dirname {} \; | head -n 1) + +.PHONY: python +python: + @(cd python && \ + uv sync --group dev --no-install-project && \ + CMAKE_ARGS="-DTGN_BUILD_PYTHON=ON" \ + uv pip install -e . --no-build-isolation) + +.PHONY: test-python +test-python: python + @echo "๐Ÿงช Running tests..." + @if [ -z "$(TGN_LIB_DIR)" ]; then echo "โŒ Error: libtgn.so not found. Run 'make python' first."; exit 1; fi + @echo "๐Ÿ“ Found Libs: $(TGN_LIB_DIR)" + @echo "๐Ÿ“ Found Ext: $(PYTHON_SO_DIR)" + # PYTHONPATH: ensures 'import tguf' works by pointing to source and build artifacts + # LD_LIBRARY_PATH: ensures the linker finds libtgn.so at runtime + cd python && \ + PYTHONPATH=$(PYTHON_SO_DIR):$(shell pwd)/python:$$PYTHONPATH \ + LD_LIBRARY_PATH=$(TGN_LIB_DIR):$LD_LIBRARY_PATH \ + uv run pytest test/ -v + +.PHONY: clean-python +clean-python: + rm -rf python/build + .PHONY: clean clean: rm -rf $(BUILD_DIR) diff --git a/python/.python-version b/python/.python-version new file mode 100644 index 0000000..c8cfe39 --- /dev/null +++ b/python/.python-version @@ -0,0 +1 @@ +3.10 diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt new file mode 100644 index 0000000..5fe6c9c --- /dev/null +++ b/python/CMakeLists.txt @@ -0,0 +1,36 @@ +cmake_minimum_required(VERSION 3.16) +project( + tgn_python + VERSION 0.1.0 + DESCRIPTION "Python bindings for tgn.cpp" + LANGUAGES CXX +) + + +if (CMAKE_VERSION VERSION_LESS 3.18) + set(DEV_MODULE Development) +else() + set(DEV_MODULE Development.Module) +endif() + +find_package(Python 3.10 COMPONENTS Interpreter ${DEV_MODULE} REQUIRED) + +execute_process( + COMMAND "${Python_EXECUTABLE}" -m nanobind --cmake_dir + OUTPUT_STRIP_TRAILING_WHITESPACE OUTPUT_VARIABLE nanobind_ROOT) +find_package(nanobind CONFIG REQUIRED) + +set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE) +set(CMAKE_INSTALL_RPATH "$ORIGIN;${CMAKE_BINARY_DIR}") + +nanobind_add_module( + _core + NB_STATIC + nanobind/main.cpp +) + +target_link_libraries(_core PRIVATE tgn) + +install(TARGETS _core + LIBRARY DESTINATION tguf + COMPONENT python_bindings) diff --git a/python/README.md b/python/README.md new file mode 100644 index 0000000..c4299e4 --- /dev/null +++ b/python/README.md @@ -0,0 +1 @@ +#### Python bindings for tgn.cpp TGUFBuilder. diff --git a/python/nanobind/main.cpp b/python/nanobind/main.cpp new file mode 100644 index 0000000..c4279bb --- /dev/null +++ b/python/nanobind/main.cpp @@ -0,0 +1,127 @@ +#include +#include +#include +#include +#include + +#include + +#include "tgn.h" + +namespace nb = nanobind; + +// This takes any Python object supporting DLPack/Buffer Protocol +torch::Tensor tensor_view(nb::ndarray<> array, torch::ScalarType type) { + std::vector shape; + for (auto i = 0; i < array.ndim(); ++i) { + shape.push_back(array.shape(i)); + } + return torch::from_blob(array.data(), shape, + torch::TensorOptions().dtype(type)); +} + +NB_MODULE(_core, m) { + nb::class_(m, "TGUFSchema") + .def( + "__init__", + [](tgn::TGUFSchema *self, std::string path, + std::optional edge_capacity, + std::optional msg_dim, + std::optional label_dim, + std::optional node_feat_capacity, + std::optional node_feat_dim, + std::optional label_capacity, + std::optional negatives_start_e_id, + std::optional negatives_per_edge, + std::optional val_start, + std::optional test_start) { + new (self) tgn::TGUFSchema(); + self->path = std::move(path); + self->edge_capacity = edge_capacity.value_or(0); + self->msg_dim = msg_dim.value_or(0); + self->node_feat_capacity = node_feat_capacity.value_or(0); + self->node_feat_dim = node_feat_dim.value_or(0); + self->label_capacity = label_capacity.value_or(0); + self->label_dim = label_dim.value_or(0); + self->negatives_start_e_id = negatives_start_e_id.value_or(0); + self->negatives_per_edge = negatives_per_edge.value_or(0); + self->val_start = val_start; + self->test_start = test_start; + }, + nb::arg("path"), nb::arg("edge_capacity") = nb::none(), + nb::arg("msg_dim") = nb::none(), nb::arg("label_dim") = nb::none(), + nb::arg("node_feat_capacity") = nb::none(), + nb::arg("node_feat_dim") = nb::none(), + nb::arg("label_capacity") = nb::none(), + nb::arg("negatives_start_e_id") = nb::none(), + nb::arg("negatives_per_edge") = nb::none(), + nb::arg("val_start") = nb::none(), nb::arg("test_start") = nb::none()) + + .def_rw("path", &tgn::TGUFSchema::path) + .def_rw("edge_capacity", &tgn::TGUFSchema::edge_capacity) + .def_rw("msg_dim", &tgn::TGUFSchema::msg_dim) + .def_rw("label_dim", &tgn::TGUFSchema::label_dim) + .def_rw("node_feat_capacity", &tgn::TGUFSchema::node_feat_capacity) + .def_rw("node_feat_dim", &tgn::TGUFSchema::node_feat_dim) + .def_rw("label_capacity", &tgn::TGUFSchema::label_capacity) + .def_rw("negatives_start_e_id", &tgn::TGUFSchema::negatives_start_e_id) + .def_rw("negatives_per_edge", &tgn::TGUFSchema::negatives_per_edge) + .def_rw("val_start", &tgn::TGUFSchema::val_start) + .def_rw("test_start", &tgn::TGUFSchema::test_start); + + nb::class_(m, "Batch") + .def( + "__init__", + [](tgn::Batch *self, nb::ndarray<> src, nb::ndarray<> dst, + nb::ndarray<> time, nb::ndarray<> msg, + std::optional> neg_dst) { + new (self) tgn::Batch{ + tensor_view(src, torch::kLong), tensor_view(dst, torch::kLong), + tensor_view(time, torch::kLong), + tensor_view(msg, torch::kFloat), + neg_dst + ? std::make_optional(tensor_view(*neg_dst, torch::kLong)) + : std::nullopt}; + }, + nb::arg("src"), nb::arg("dst"), nb::arg("time"), nb::arg("msg"), + nb::arg("neg_dst") = nb::none()); + + nb::class_(m, "TGUFBuilder") + .def(nb::init(), nb::arg("schema")) + + .def( + "append_edges", + [](const tgn::TGUFBuilder &self, const tgn::Batch &batch) { + nb::gil_scoped_release release; + self.append_edges(batch); + }, + nb::arg("batch")) + + .def( + "append_labels", + [](const tgn::TGUFBuilder &self, nb::ndarray<> n_id, + nb::ndarray<> time, nb::ndarray<> target) { + nb::gil_scoped_release release; + + self.append_labels(tensor_view(n_id, torch::kLong), + tensor_view(time, torch::kLong), + tensor_view(target, torch::kFloat)); + }, + nb::arg("n_id"), nb::arg("time"), nb::arg("target")) + + .def( + "append_node_feats", + [](const tgn::TGUFBuilder &self, nb::ndarray<> n_id, + nb::ndarray<> node_feat) { + nb::gil_scoped_release release; + + self.append_node_feats(tensor_view(n_id, torch::kLong), + tensor_view(node_feat, torch::kFloat)); + }, + nb::arg("n_id"), nb::arg("node_feat")) + + .def("finalize", [](tgn::TGUFBuilder &self) { + nb::gil_scoped_release release; + self.finalize(); + }); +} diff --git a/python/pyproject.toml b/python/pyproject.toml new file mode 100644 index 0000000..0d40de2 --- /dev/null +++ b/python/pyproject.toml @@ -0,0 +1,45 @@ +[project] +name = "tguf" +version = "0.1.0" +description = "Python bindings for tgn.cpp TGUFBuilder" +readme = "README.md" +requires-python = ">=3.10" +dependencies = [] + + +[dependency-groups] +dev = [ + "pytest", + "numpy", + "torch==2.10.0+cpu", + "nanobind>=2.0.0", + "scikit-build-core>=0.5.0", +] + +[tool.uv] +index = [ + { name = "pytorch-cpu", url = "https://download.pytorch.org/whl/cpu", explicit = true } +] + +[tool.uv.sources] +torch = { index = "pytorch-cpu" } + +[build-system] +requires = ["scikit-build-core>=0.5.0", "nanobind>=2.0.0"] +build-backend = "scikit_build_core.build" + +[tool.scikit-build] +cmake.args = [ + "-DTGN_BUILD_PYTHON=ON", + "-DCMAKE_BUILD_TYPE=Release", + "-DOpenMP_CXX_FLAGS=-fopenmp", + "-DOpenMP_CXX_LIB_NAMES=gomp", + "-DOpenMP_gomp_LIBRARY=/lib/x86_64-linux-gnu/libgomp.so.1", + "-DCMAKE_CXX_FLAGS=-I/usr/include -fopenmp", + "-DCMAKE_C_COMPILER=gcc", + "-DCMAKE_CXX_COMPILER=g++" +] +install.components = ["python_bindings"] +build-dir = "build/{wheel_tag}" +cmake.source-dir = ".." +editable.rebuild = true diff --git a/python/test/test_bindings.py b/python/test/test_bindings.py new file mode 100644 index 0000000..2b8568d --- /dev/null +++ b/python/test/test_bindings.py @@ -0,0 +1,122 @@ +import torch +import numpy as np +import pytest +import tempfile +from pathlib import Path +import tguf + + +def get_data(lib, values, dtype): + if lib == "torch": + dtypes = {"int64": torch.long, "float32": torch.float32} + return torch.tensor(values, dtype=dtypes[dtype]) + + dtypes = {"int64": np.int64, "float32": np.float32} + return np.array(values, dtype=dtypes[dtype]) + + +@pytest.fixture +def tguf_path(): + with tempfile.NamedTemporaryFile(suffix=".tguf", delete=False) as tmp: + path = Path(tmp.name) + yield path + if path.exists(): + path.unlink() + + +@pytest.fixture +def schema(tguf_path): + return tguf.TGUFSchema( + path=str(tguf_path), + edge_capacity=100, + node_feat_capacity=10, + node_feat_dim=4, + msg_dim=8, + label_dim=1, + label_capacity=3, + ) + + +@pytest.mark.parametrize("lib", ["torch", "numpy"]) +def test_batch_init(lib): + tguf.Batch( + src=get_data(lib, [0, 1, 2], "int64"), + dst=get_data(lib, [3, 4, 5], "int64"), + time=get_data(lib, [10, 11, 12], "int64"), + msg=get_data(lib, np.random.randn(3, 8), "float32"), + ) + +@pytest.mark.parametrize("lib", ["torch", "numpy"]) +def test_batch_init_with_negs(lib): + tguf.Batch( + src=get_data(lib, [0, 1, 2], "int64"), + dst=get_data(lib, [3, 4, 5], "int64"), + time=get_data(lib, [10, 11, 12], "int64"), + msg=get_data(lib, np.random.randn(3, 8), "float32"), + neg_dst=get_data(lib, [3, 4, 5], "int64"), + ) + + +def test_schema_init(): + schema = tguf.TGUFSchema(path="test.tguf", edge_capacity=500, msg_dim=16) + + assert schema.edge_capacity == 500 + assert schema.label_dim == 0 + assert schema.val_start is None + assert schema.test_start is None + + schema.val_start = 1000 + assert schema.val_start == 1000 + + +@pytest.mark.parametrize("lib", ["torch", "numpy"]) +def test_builder_append_edges(schema, lib, tguf_path): + builder = tguf.TGUFBuilder(schema) + + batch = tguf.Batch( + src=get_data(lib, [0, 1], "int64"), + dst=get_data(lib, [1, 0], "int64"), + time=get_data(lib, [10, 11], "int64"), + msg=get_data(lib, np.random.randn(2, 8), "float32"), + ) + builder.append_edges(batch) + + builder.finalize() + assert tguf_path.exists() + assert tguf_path.stat().st_size > 0 + + +@pytest.mark.parametrize("lib", ["torch", "numpy"]) +def test_builder_append_labels(schema, lib, tguf_path): + builder = tguf.TGUFBuilder(schema) + + builder.append_labels( + get_data(lib, [0, 1], "int64"), + get_data(lib, [10, 11], "int64"), + get_data(lib, np.random.randn(2, 1), "float32"), + ) + + builder.finalize() + assert tguf_path.exists() + assert tguf_path.stat().st_size > 0 + + +@pytest.mark.parametrize("lib", ["torch", "numpy"]) +def test_builder_append_node_feats(schema, lib, tguf_path): + builder = tguf.TGUFBuilder(schema) + + builder.append_node_feats( + get_data(lib, [0, 1], "int64"), get_data(lib, np.random.randn(2, 4), "float32") + ) + + builder.finalize() + assert tguf_path.exists() + assert tguf_path.stat().st_size > 0 + + +def test_builder_finalize_creates_file(schema, tguf_path): + if tguf_path.exists(): + tguf_path.unlink() + + tguf.TGUFBuilder(schema).finalize() + assert tguf_path.exists() diff --git a/python/tguf/__init__.py b/python/tguf/__init__.py new file mode 100644 index 0000000..1a7173a --- /dev/null +++ b/python/tguf/__init__.py @@ -0,0 +1,3 @@ +from ._core import TGUFBuilder, TGUFSchema, Batch + +__all__ = ["TGUFBuilder", "TGUFSchema", "Batch"] diff --git a/python/uv.lock b/python/uv.lock new 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"https://files.pythonhosted.org/packages/18/67/36e9267722cc04a6b9f15c7f3441c2363321a3ea07da7ae0c0707beb2a9c/typing_extensions-4.15.0-py3-none-any.whl", hash = "sha256:f0fa19c6845758ab08074a0cfa8b7aecb71c999ca73d62883bc25cc018c4e548", size = 44614, upload-time = "2025-08-25T13:49:24.86Z" }, +] From 970b58550e05add7f08046f87bb554fa6e96b07d Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 12:01:47 -0400 Subject: [PATCH 02/18] WIP --- .github/workflows/ci.yml | 44 ++++++++++++++++++++++++++++++++++++++++ Makefile | 10 ++------- 2 files changed, 46 insertions(+), 8 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 07ea4f0..165fd15 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -98,3 +98,47 @@ jobs: docker run --rm \ -v "$(pwd):/workspace:Z" \ tgn-dev /bin/bash -c "make test" + + python-tests: + needs: build + runs-on: ${{ matrix.os }} + strategy: + fail-fast: false + matrix: + os: [ubuntu-latest, macos-latest] + python-version: ["3.10"] + + steps: + - uses: actions/checkout@v4 + + - name: Download Build Artifacts + uses: actions/download-artifact@v4 + with: + name: build-${{ matrix.os }} + path: build/ + + - name: Setup uv + uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + + - name: Install System Deps (macOS) + if: runner.os == 'macOS' + run: brew install libomp + + - name: Install & Test Python Bindings + run: | + make python + make test-python + + python-tests-on-container: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + - name: Run Python Suite in Container + run: | + docker build -t tgn-dev . + docker run --rm \ + -v "$(pwd):/workspace:Z" \ + tgn-dev /bin/bash -c "make python && make test-python" diff --git a/Makefile b/Makefile index fbdeaf3..fde9076 100644 --- a/Makefile +++ b/Makefile @@ -142,16 +142,10 @@ python: .PHONY: test-python test-python: python - @echo "๐Ÿงช Running tests..." - @if [ -z "$(TGN_LIB_DIR)" ]; then echo "โŒ Error: libtgn.so not found. Run 'make python' first."; exit 1; fi - @echo "๐Ÿ“ Found Libs: $(TGN_LIB_DIR)" - @echo "๐Ÿ“ Found Ext: $(PYTHON_SO_DIR)" - # PYTHONPATH: ensures 'import tguf' works by pointing to source and build artifacts - # LD_LIBRARY_PATH: ensures the linker finds libtgn.so at runtime - cd python && \ + @(cd python && \ PYTHONPATH=$(PYTHON_SO_DIR):$(shell pwd)/python:$$PYTHONPATH \ LD_LIBRARY_PATH=$(TGN_LIB_DIR):$LD_LIBRARY_PATH \ - uv run pytest test/ -v + uv run pytest test/ -v) .PHONY: clean-python clean-python: From b9f2ed16060b7f55c0e4bf9ff2cfad7b8878e5dd Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 12:51:41 -0400 Subject: [PATCH 03/18] WIP --- .github/workflows/ci.yml | 8 +++----- Makefile | 8 +------- 2 files changed, 4 insertions(+), 12 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 165fd15..afe4c40 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -114,7 +114,7 @@ jobs: - name: Download Build Artifacts uses: actions/download-artifact@v4 with: - name: build-${{ matrix.os }} + name: build-${{ matrix.os }}-Release path: build/ - name: Setup uv @@ -127,9 +127,7 @@ jobs: run: brew install libomp - name: Install & Test Python Bindings - run: | - make python - make test-python + run: make test-python python-tests-on-container: runs-on: ubuntu-latest @@ -141,4 +139,4 @@ jobs: docker build -t tgn-dev . docker run --rm \ -v "$(pwd):/workspace:Z" \ - tgn-dev /bin/bash -c "make python && make test-python" + tgn-dev /bin/bash -c "make test-python" diff --git a/Makefile b/Makefile index fde9076..5938c3e 100644 --- a/Makefile +++ b/Makefile @@ -129,10 +129,6 @@ perf-node-%: profile-build data/%.tguf download-%: data/%.tguf @echo "Dataset $* is up to date." - -TGN_LIB_DIR := $(shell find python/build -name "libtgn.so" -exec dirname {} \; | head -n 1) -PYTHON_SO_DIR := $(shell find python/build -name "_core*.so" -exec dirname {} \; | head -n 1) - .PHONY: python python: @(cd python && \ @@ -143,9 +139,7 @@ python: .PHONY: test-python test-python: python @(cd python && \ - PYTHONPATH=$(PYTHON_SO_DIR):$(shell pwd)/python:$$PYTHONPATH \ - LD_LIBRARY_PATH=$(TGN_LIB_DIR):$LD_LIBRARY_PATH \ - uv run pytest test/ -v) + uv run pytest test/) .PHONY: clean-python clean-python: From c68a13a8d341527c5a11d3b0823eef3ef96d98d6 Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 12:55:32 -0400 Subject: [PATCH 04/18] WIP --- Makefile | 4 +--- python/pyproject.toml | 8 ++++---- 2 files changed, 5 insertions(+), 7 deletions(-) diff --git a/Makefile b/Makefile index 5938c3e..55214de 100644 --- a/Makefile +++ b/Makefile @@ -133,13 +133,11 @@ download-%: data/%.tguf python: @(cd python && \ uv sync --group dev --no-install-project && \ - CMAKE_ARGS="-DTGN_BUILD_PYTHON=ON" \ uv pip install -e . --no-build-isolation) .PHONY: test-python test-python: python - @(cd python && \ - uv run pytest test/) + @(cd python && uv run pytest test/) .PHONY: clean-python clean-python: diff --git a/python/pyproject.toml b/python/pyproject.toml index 0d40de2..cc9e686 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -30,14 +30,14 @@ build-backend = "scikit_build_core.build" [tool.scikit-build] cmake.args = [ - "-DTGN_BUILD_PYTHON=ON", "-DCMAKE_BUILD_TYPE=Release", + "-DCMAKE_CXX_COMPILER=g++", + "-DCMAKE_CXX_FLAGS=-I/usr/include -fopenmp", + "-DCMAKE_C_COMPILER=gcc", "-DOpenMP_CXX_FLAGS=-fopenmp", "-DOpenMP_CXX_LIB_NAMES=gomp", "-DOpenMP_gomp_LIBRARY=/lib/x86_64-linux-gnu/libgomp.so.1", - "-DCMAKE_CXX_FLAGS=-I/usr/include -fopenmp", - "-DCMAKE_C_COMPILER=gcc", - "-DCMAKE_CXX_COMPILER=g++" + "-DTGN_BUILD_PYTHON=ON", ] install.components = ["python_bindings"] build-dir = "build/{wheel_tag}" From a2726e92eac64c3aae4935d0b5e1c7d93c93222a Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 12:56:52 -0400 Subject: [PATCH 05/18] WIP --- python/pyproject.toml | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/python/pyproject.toml b/python/pyproject.toml index cc9e686..f76652b 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -43,3 +43,10 @@ install.components = ["python_bindings"] build-dir = "build/{wheel_tag}" cmake.source-dir = ".." editable.rebuild = true + +[tool.pytest.ini_options] +addopts = [ + "--capture=no", + "--color=yes", + "-vvv", +] From d0a949370d37a9086ff6db9b3831ea13409e78cb Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 13:02:16 -0400 Subject: [PATCH 06/18] WIP --- python/pyproject.toml | 12 ++++-- python/uv.lock | 90 ++++++++++++++++++++++++++++++++++--------- 2 files changed, 79 insertions(+), 23 deletions(-) diff --git a/python/pyproject.toml b/python/pyproject.toml index f76652b..5304ff9 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -11,19 +11,23 @@ dependencies = [] dev = [ "pytest", "numpy", - "torch==2.10.0+cpu", + "torch", "nanobind>=2.0.0", "scikit-build-core>=0.5.0", ] [tool.uv] -index = [ - { name = "pytorch-cpu", url = "https://download.pytorch.org/whl/cpu", explicit = true } -] +managed = true +package = true [tool.uv.sources] torch = { index = "pytorch-cpu" } +[[tool.uv.index]] +name = "pytorch-cpu" +url = "https://download.pytorch.org/whl/cpu" +explicit = true + [build-system] requires = ["scikit-build-core>=0.5.0", "nanobind>=2.0.0"] build-backend = "scikit_build_core.build" diff --git a/python/uv.lock b/python/uv.lock index 550fc37..5ec2904 100644 --- a/python/uv.lock +++ b/python/uv.lock @@ -2,9 +2,12 @@ version = 1 revision = 2 requires-python = ">=3.10" resolution-markers = [ - "python_full_version >= '3.12'", - "python_full_version == '3.11.*'", - "python_full_version < '3.11'", + "python_full_version >= '3.12' and sys_platform != 'darwin'", + "python_full_version >= '3.12' and sys_platform == 'darwin'", + "python_full_version == '3.11.*' and sys_platform != 'darwin'", + "python_full_version == '3.11.*' and sys_platform == 'darwin'", + "python_full_version < '3.11' and sys_platform != 'darwin'", + "python_full_version < '3.11' and sys_platform == 'darwin'", ] [[package]] @@ -175,7 +178,8 @@ name = "networkx" version = "3.4.2" source = { registry = "https://pypi.org/simple" } resolution-markers = [ - "python_full_version < '3.11'", + "python_full_version < '3.11' and sys_platform != 'darwin'", + "python_full_version < '3.11' and sys_platform == 'darwin'", ] sdist = { url = "https://files.pythonhosted.org/packages/fd/1d/06475e1cd5264c0b870ea2cc6fdb3e37177c1e565c43f56ff17a10e3937f/networkx-3.4.2.tar.gz", hash = "sha256:307c3669428c5362aab27c8a1260aa8f47c4e91d3891f48be0141738d8d053e1", size = 2151368, upload-time = "2024-10-21T12:39:38.695Z" } wheels = [ @@ -187,8 +191,10 @@ name = "networkx" version = "3.6.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ - "python_full_version >= '3.12'", - "python_full_version == '3.11.*'", + "python_full_version >= '3.12' and sys_platform != 'darwin'", + "python_full_version >= '3.12' and sys_platform == 'darwin'", + "python_full_version == '3.11.*' and sys_platform != 'darwin'", + "python_full_version == '3.11.*' and sys_platform == 'darwin'", ] sdist = { url = "https://files.pythonhosted.org/packages/6a/51/63fe664f3908c97be9d2e4f1158eb633317598cfa6e1fc14af5383f17512/networkx-3.6.1.tar.gz", hash = "sha256:26b7c357accc0c8cde558ad486283728b65b6a95d85ee1cd66bafab4c8168509", size = 2517025, upload-time = "2025-12-08T17:02:39.908Z" } wheels = [ @@ -200,7 +206,8 @@ name = "numpy" version = "2.2.6" source = { registry = "https://pypi.org/simple" } resolution-markers = [ - "python_full_version < '3.11'", + "python_full_version < '3.11' and sys_platform != 'darwin'", + "python_full_version < '3.11' and sys_platform == 'darwin'", ] sdist = { url = "https://files.pythonhosted.org/packages/76/21/7d2a95e4bba9dc13d043ee156a356c0a8f0c6309dff6b21b4d71a073b8a8/numpy-2.2.6.tar.gz", hash = "sha256:e29554e2bef54a90aa5cc07da6ce955accb83f21ab5de01a62c8478897b264fd", size = 20276440, upload-time = 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"scikit-build-core" }, - { name = "torch" }, + { name = "torch", version = "2.10.0", source = { registry = "https://download.pytorch.org/whl/cpu" }, marker = "sys_platform == 'darwin'" }, + { name = "torch", version = "2.10.0+cpu", source = { registry = "https://download.pytorch.org/whl/cpu" }, marker = "sys_platform != 'darwin'" }, ] [package.metadata] @@ -457,7 +467,7 @@ dev = [ { name = "numpy" }, { name = "pytest" }, { name = "scikit-build-core", specifier = ">=0.5.0" }, - { name = "torch", specifier = "==2.10.0+cpu", index = "https://download.pytorch.org/whl/cpu" }, + { name = "torch", index = "https://download.pytorch.org/whl/cpu" }, ] [[package]] @@ -514,19 +524,61 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/23/d1/136eb2cb77520a31e1f64cbae9d33ec6df0d78bdf4160398e86eec8a8754/tomli-2.4.0-py3-none-any.whl", hash = "sha256:1f776e7d669ebceb01dee46484485f43a4048746235e683bcdffacdf1fb4785a", size = 14477, upload-time = "2026-01-11T11:22:37.446Z" }, ] +[[package]] +name = "torch" +version = "2.10.0" +source = { registry = "https://download.pytorch.org/whl/cpu" } +resolution-markers = [ + "python_full_version >= '3.12' and sys_platform == 'darwin'", + "python_full_version == '3.11.*' and sys_platform == 'darwin'", + "python_full_version < '3.11' and sys_platform == 'darwin'", +] +dependencies = [ + { name = "filelock", marker = "sys_platform == 'darwin'" }, + { name = "fsspec", marker = "sys_platform == 'darwin'" }, + { name = "jinja2", marker = "sys_platform == 'darwin'" }, + { name = "networkx", version = "3.4.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11' and sys_platform == 'darwin'" }, + { name = "networkx", version = "3.6.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11' and sys_platform == 'darwin'" }, + { name = "setuptools", marker = "python_full_version >= '3.12' and sys_platform == 'darwin'" }, + { name = "sympy", marker = "sys_platform == 'darwin'" }, + { name = "typing-extensions", marker = "sys_platform == 'darwin'" }, +] +wheels = [ + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-1-cp310-none-macosx_11_0_arm64.whl", hash = "sha256:4db72a4d257c45c3502f11764ee41460a87312fdc3dff47a8957812efe961725" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-1-cp311-none-macosx_11_0_arm64.whl", hash = "sha256:0826ac8e409551e12b2360ac18b4161a838cbd111933e694752f351191331d09" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-1-cp312-none-macosx_11_0_arm64.whl", hash = "sha256:7fbbf409143a4fe0812a40c0b46a436030a7e1d14fe8c5234dfbe44df47f617e" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-1-cp313-none-macosx_11_0_arm64.whl", hash = "sha256:b39cafff7229699f9d6e172cac74d85fd71b568268e439e08d9c540e54732a3e" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-2-cp310-none-macosx_11_0_arm64.whl", hash = "sha256:7417ef370d7c3969dd509dae8d5c7daeb945af335ab76dd38358ba30a91251c1" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-2-cp311-none-macosx_11_0_arm64.whl", hash = "sha256:90821a3194b8806d9fa9fdaa9308c1bc73df0c26808274b14129a97c99f35794" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-2-cp312-none-macosx_11_0_arm64.whl", hash = "sha256:358bd7125cbec6e692d60618a5eec7f55a51b29e3652a849fd42af021d818023" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-2-cp313-none-macosx_11_0_arm64.whl", hash = "sha256:470de4176007c2700735e003a830828a88d27129032a3add07291da07e2a94e8" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-cp310-none-macosx_11_0_arm64.whl", hash = "sha256:2d16abfce6c92584ceeb00c3b2665d5798424dd9ed235ea69b72e045cd53ae97" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-cp311-none-macosx_11_0_arm64.whl", hash = "sha256:4584ab167995c0479f6821e3dceaf199c8166c811d3adbba5d8eedbbfa6764fd" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-cp312-none-macosx_11_0_arm64.whl", hash = "sha256:45a1c5057629444aeb1c452c18298fa7f30f2f7aeadd4dc41f9d340980294407" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-cp313-cp313t-macosx_14_0_arm64.whl", hash = "sha256:339e05502b6c839db40e88720cb700f5a3b50cda332284873e851772d41b2c1e" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-cp313-none-macosx_11_0_arm64.whl", hash = "sha256:840351da59cedb7bcbc51981880050813c19ef6b898a7fecf73a3afc71aff3fe" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-cp314-cp314-macosx_14_0_arm64.whl", hash = "sha256:c88b1129fd4e14f0f882963c6728315caae35d2f47374d17edeed1edc7697497" }, + { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0-cp314-cp314t-macosx_14_0_arm64.whl", hash = "sha256:f4bea7dc451267c028593751612ad559299589304e68df54ae7672427893ff2c" }, +] + [[package]] name = "torch" version = "2.10.0+cpu" source = { registry = "https://download.pytorch.org/whl/cpu" } +resolution-markers = [ + "python_full_version >= '3.12' and sys_platform != 'darwin'", + "python_full_version == '3.11.*' and sys_platform != 'darwin'", + "python_full_version < '3.11' and sys_platform != 'darwin'", +] dependencies = [ - { name = "filelock" }, - { name = "fsspec" }, - { name = "jinja2" }, - { name = "networkx", version = "3.4.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, - { name = "networkx", version = "3.6.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, - { name = "setuptools", marker = "python_full_version >= '3.12'" }, - { name = "sympy" }, - { name = "typing-extensions" }, + { name = "filelock", marker = "sys_platform != 'darwin'" }, + { name = "fsspec", marker = "sys_platform != 'darwin'" }, + { name = "jinja2", marker = "sys_platform != 'darwin'" }, + { name = "networkx", version = "3.4.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11' and sys_platform != 'darwin'" }, + { name = "networkx", version = "3.6.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11' and sys_platform != 'darwin'" }, + { name = "setuptools", marker = "python_full_version >= '3.12' and sys_platform != 'darwin'" }, + { name = "sympy", marker = "sys_platform != 'darwin'" }, + { name = "typing-extensions", marker = "sys_platform != 'darwin'" }, ] wheels = [ { url = "https://download.pytorch.org/whl/cpu/torch-2.10.0%2Bcpu-cp310-cp310-linux_aarch64.whl", hash = "sha256:31ae44836c8b9bbd1a3943d29c7c7457709ddf7c6173aa34aefe9d2203e4c405" }, From 86be361096d1d7b58bb4c7a88c4442e319237052 Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 13:19:45 -0400 Subject: [PATCH 07/18] WIP --- python/pyproject.toml | 1 - 1 file changed, 1 deletion(-) diff --git a/python/pyproject.toml b/python/pyproject.toml index 5304ff9..37d91b4 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -36,7 +36,6 @@ build-backend = "scikit_build_core.build" cmake.args = [ "-DCMAKE_BUILD_TYPE=Release", "-DCMAKE_CXX_COMPILER=g++", - "-DCMAKE_CXX_FLAGS=-I/usr/include -fopenmp", "-DCMAKE_C_COMPILER=gcc", "-DOpenMP_CXX_FLAGS=-fopenmp", "-DOpenMP_CXX_LIB_NAMES=gomp", From 53889eddd1be807aec7d57900262b93af20204ed Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 14:36:55 -0400 Subject: [PATCH 08/18] WIP --- python/CMakeLists.txt | 1 + python/pyproject.toml | 10 +++++----- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt index 5fe6c9c..dfc1ffd 100644 --- a/python/CMakeLists.txt +++ b/python/CMakeLists.txt @@ -22,6 +22,7 @@ find_package(nanobind CONFIG REQUIRED) set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE) set(CMAKE_INSTALL_RPATH "$ORIGIN;${CMAKE_BINARY_DIR}") +set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -stdlib=libstdc++") nanobind_add_module( _core diff --git a/python/pyproject.toml b/python/pyproject.toml index 37d91b4..2c731df 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -35,11 +35,11 @@ build-backend = "scikit_build_core.build" [tool.scikit-build] cmake.args = [ "-DCMAKE_BUILD_TYPE=Release", - "-DCMAKE_CXX_COMPILER=g++", - "-DCMAKE_C_COMPILER=gcc", - "-DOpenMP_CXX_FLAGS=-fopenmp", - "-DOpenMP_CXX_LIB_NAMES=gomp", - "-DOpenMP_gomp_LIBRARY=/lib/x86_64-linux-gnu/libgomp.so.1", + "-DCMAKE_C_COMPILER=clang", + "-DCMAKE_CXX_COMPILER=clang++", + "-DOpenMP_CXX_FLAGS=-fopenmp=libomp", + "-DOpenMP_CXX_LIB_NAMES=omp", + "-DOpenMP_omp_LIBRARY=/usr/lib/llvm-18/lib/libomp.so", "-DTGN_BUILD_PYTHON=ON", ] install.components = ["python_bindings"] From 2a535e98964097d6a19004a8d327bb4d00f8f5c8 Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 14:41:59 -0400 Subject: [PATCH 09/18] WIP --- .github/workflows/ci.yml | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index afe4c40..73f8011 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -122,7 +122,13 @@ jobs: with: enable-cache: true - - name: Install System Deps (macOS) + - name: Install Clang Dependencies + if: runner.os == 'Linux' + run: | + sudo apt-get update + sudo apt-get install -y clang libc++-dev libc++abi-dev + + - name: Install OpenMP (MacOS) if: runner.os == 'macOS' run: brew install libomp From 80e4999326e316364f756df09deb94f6b03c25c7 Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 14:49:57 -0400 Subject: [PATCH 10/18] WIP --- .github/workflows/ci.yml | 4 ++-- .github/workflows/integration.yml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 73f8011..a8ffc57 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -24,7 +24,7 @@ jobs: if: runner.os == 'Linux' run: | sudo apt-get update - sudo apt-get install -y clang libc++-dev libc++abi-dev + sudo apt-get install -y clang libc++-dev libc++abi-dev libomp-18-dev - name: Install OpenMP (MacOS) if: runner.os == 'macOS' @@ -126,7 +126,7 @@ jobs: if: runner.os == 'Linux' run: | sudo apt-get update - sudo apt-get install -y clang libc++-dev libc++abi-dev + sudo apt-get install -y clang libc++-dev libc++abi-dev libomp-18-dev - name: Install OpenMP (MacOS) if: runner.os == 'macOS' diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml index 1bf4123..1b4ee46 100644 --- a/.github/workflows/integration.yml +++ b/.github/workflows/integration.yml @@ -23,7 +23,7 @@ jobs: if: runner.os == 'Linux' run: | sudo apt-get update - sudo apt-get install -y clang libc++-dev libc++abi-dev + sudo apt-get install -y clang libc++-dev libc++abi-dev libomp-18-dev - name: Install OpenMP (MacOS) if: runner.os == 'macOS' From 95051dca43277ce649f13c1d828c1d5f38163ede Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 15:07:18 -0400 Subject: [PATCH 11/18] WIP --- Makefile | 9 +++++++++ python/pyproject.toml | 1 - 2 files changed, 9 insertions(+), 1 deletion(-) diff --git a/Makefile b/Makefile index 55214de..2c78750 100644 --- a/Makefile +++ b/Makefile @@ -6,6 +6,14 @@ EXAMPLE_LINK := $(BUILD_DIR)/examples/tgn_link_pred EXAMPLE_NODE := $(BUILD_DIR)/examples/tgn_node_pred EXAMPLE_LINK_PROF := $(PROFILE_DIR)/examples/tgn_link_pred EXAMPLE_NODE_PROF := $(PROFILE_DIR)/examples/tgn_node_pred +UNAME_S := $(shell uname -s) + +ifeq ($(UNAME_S), Linux) + OMP_LIB = /usr/lib/llvm-18/lib/libomp.so +endif +ifeq ($(UNAME_S), Darwin) + OMP_LIB = /opt/homebrew/opt/libomp/lib/libomp.dylib +endif MAKEFLAGS += --no-print-directory BUILD_TYPE ?= Release @@ -133,6 +141,7 @@ download-%: data/%.tguf python: @(cd python && \ uv sync --group dev --no-install-project && \ + SKBUILD_CMAKE_ARGS="-DOpenMP_omp_LIBRARY=$(OMP_LIB)" \ uv pip install -e . --no-build-isolation) .PHONY: test-python diff --git a/python/pyproject.toml b/python/pyproject.toml index 2c731df..1910f6e 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -39,7 +39,6 @@ cmake.args = [ "-DCMAKE_CXX_COMPILER=clang++", "-DOpenMP_CXX_FLAGS=-fopenmp=libomp", "-DOpenMP_CXX_LIB_NAMES=omp", - "-DOpenMP_omp_LIBRARY=/usr/lib/llvm-18/lib/libomp.so", "-DTGN_BUILD_PYTHON=ON", ] install.components = ["python_bindings"] From 7539f6c83e5ab5c97588b3a103d9238f94048cc2 Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 15:36:30 -0400 Subject: [PATCH 12/18] WIP --- CMakeLists.txt | 2 ++ Makefile | 3 ++- python/pyproject.toml | 16 +++++++++++++++- 3 files changed, 19 insertions(+), 2 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index 54d037c..45fb13c 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -91,7 +91,9 @@ if (TGN_BUILD_TOOLS) add_subdirectory(tools/tguf_cli) endif() +message(STATUS "--- DEBUG: TGN_BUILD_PYTHON is [${TGN_BUILD_PYTHON}] ---") if (TGN_BUILD_PYTHON) + message(STATUS ">>> TGN_BUILD_PYTHON is ON - Adding python subdirectory") add_subdirectory(python) endif() diff --git a/Makefile b/Makefile index 2c78750..04f7c9a 100644 --- a/Makefile +++ b/Makefile @@ -141,7 +141,8 @@ download-%: data/%.tguf python: @(cd python && \ uv sync --group dev --no-install-project && \ - SKBUILD_CMAKE_ARGS="-DOpenMP_omp_LIBRARY=$(OMP_LIB)" \ + #SKBUILD_CMAKE_ARGS="-DOpenMP_omp_LIBRARY=$(OMP_LIB)" \ + SKBUILD_CMAKE_ARGS="-DTGN_BUILD_PYTHON=ON" \ uv pip install -e . --no-build-isolation) .PHONY: test-python diff --git a/python/pyproject.toml b/python/pyproject.toml index 1910f6e..60b50f5 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -42,10 +42,24 @@ cmake.args = [ "-DTGN_BUILD_PYTHON=ON", ] install.components = ["python_bindings"] -build-dir = "build/{wheel_tag}" +build-dir = "build" cmake.source-dir = ".." editable.rebuild = true +# --- Linux Specific Overrides --- +[[tool.scikit-build.overrides]] +if.platform-system = "linux" +cmake.args = [ + "-DOpenMP_omp_LIBRARY=/usr/lib/llvm-18/lib/libomp.so" +] + +# --- macOS Specific Overrides --- +[[tool.scikit-build.overrides]] +if.platform-system = "darwin" +cmake.args = [ + "-DOpenMP_omp_LIBRARY=/opt/homebrew/opt/libomp/lib/libomp.dylib" +] + [tool.pytest.ini_options] addopts = [ "--capture=no", From 13dc96997bf1c7e08ef5f25a1a6647a93bfcd14a Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 15:40:47 -0400 Subject: [PATCH 13/18] WIP --- Makefile | 1 - 1 file changed, 1 deletion(-) diff --git a/Makefile b/Makefile index 04f7c9a..374c9fe 100644 --- a/Makefile +++ b/Makefile @@ -141,7 +141,6 @@ download-%: data/%.tguf python: @(cd python && \ uv sync --group dev --no-install-project && \ - #SKBUILD_CMAKE_ARGS="-DOpenMP_omp_LIBRARY=$(OMP_LIB)" \ SKBUILD_CMAKE_ARGS="-DTGN_BUILD_PYTHON=ON" \ uv pip install -e . --no-build-isolation) From f29edb24043d2673daa7dbfe57c4fc25ebbfbab1 Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 15:42:30 -0400 Subject: [PATCH 14/18] WIP --- python/CMakeLists.txt | 1 - 1 file changed, 1 deletion(-) diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt index dfc1ffd..5fe6c9c 100644 --- a/python/CMakeLists.txt +++ b/python/CMakeLists.txt @@ -22,7 +22,6 @@ find_package(nanobind CONFIG REQUIRED) set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE) set(CMAKE_INSTALL_RPATH "$ORIGIN;${CMAKE_BINARY_DIR}") -set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -stdlib=libstdc++") nanobind_add_module( _core From 926131ef4ee6a8ba67fc02d47fc0a2a0efeeb33b Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 15:43:41 -0400 Subject: [PATCH 15/18] WIP --- CMakeLists.txt | 2 -- 1 file changed, 2 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index 45fb13c..54d037c 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -91,9 +91,7 @@ if (TGN_BUILD_TOOLS) add_subdirectory(tools/tguf_cli) endif() -message(STATUS "--- DEBUG: TGN_BUILD_PYTHON is [${TGN_BUILD_PYTHON}] ---") if (TGN_BUILD_PYTHON) - message(STATUS ">>> TGN_BUILD_PYTHON is ON - Adding python subdirectory") add_subdirectory(python) endif() From b9e09fa14e0020fddf9dc9c4091c6139eefa6108 Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 15:44:23 -0400 Subject: [PATCH 16/18] WIP --- Makefile | 8 -------- 1 file changed, 8 deletions(-) diff --git a/Makefile b/Makefile index 374c9fe..36691ad 100644 --- a/Makefile +++ b/Makefile @@ -6,14 +6,6 @@ EXAMPLE_LINK := $(BUILD_DIR)/examples/tgn_link_pred EXAMPLE_NODE := $(BUILD_DIR)/examples/tgn_node_pred EXAMPLE_LINK_PROF := $(PROFILE_DIR)/examples/tgn_link_pred EXAMPLE_NODE_PROF := $(PROFILE_DIR)/examples/tgn_node_pred -UNAME_S := $(shell uname -s) - -ifeq ($(UNAME_S), Linux) - OMP_LIB = /usr/lib/llvm-18/lib/libomp.so -endif -ifeq ($(UNAME_S), Darwin) - OMP_LIB = /opt/homebrew/opt/libomp/lib/libomp.dylib -endif MAKEFLAGS += --no-print-directory BUILD_TYPE ?= Release From 08c2d32fc2e41775ce515ff8bbceed5498d1cb94 Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 15:52:21 -0400 Subject: [PATCH 17/18] WIP --- python/pyproject.toml | 5 ----- 1 file changed, 5 deletions(-) diff --git a/python/pyproject.toml b/python/pyproject.toml index 60b50f5..7da6e88 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -34,26 +34,21 @@ build-backend = "scikit_build_core.build" [tool.scikit-build] cmake.args = [ - "-DCMAKE_BUILD_TYPE=Release", - "-DCMAKE_C_COMPILER=clang", "-DCMAKE_CXX_COMPILER=clang++", "-DOpenMP_CXX_FLAGS=-fopenmp=libomp", "-DOpenMP_CXX_LIB_NAMES=omp", - "-DTGN_BUILD_PYTHON=ON", ] install.components = ["python_bindings"] build-dir = "build" cmake.source-dir = ".." editable.rebuild = true -# --- Linux Specific Overrides --- [[tool.scikit-build.overrides]] if.platform-system = "linux" cmake.args = [ "-DOpenMP_omp_LIBRARY=/usr/lib/llvm-18/lib/libomp.so" ] -# --- macOS Specific Overrides --- [[tool.scikit-build.overrides]] if.platform-system = "darwin" cmake.args = [ From 2e2e58e4ebe35564d0e7e4d6f10617583b0d2285 Mon Sep 17 00:00:00 2001 From: Jacob-Chmura Date: Thu, 12 Mar 2026 16:09:52 -0400 Subject: [PATCH 18/18] WIP --- README.md | 6 ++++- python/CMakeLists.txt | 1 - python/README.md | 51 +++++++++++++++++++++++++++++++++++- python/nanobind/main.cpp | 3 +++ python/pyproject.toml | 1 - python/test/test_bindings.py | 8 +++--- python/tguf/__init__.py | 2 +- 7 files changed, 64 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index ad14c17..138f9c5 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ C++ Port of "Temporal Graph Networks for Deep Learning on Dynamic Graphs". ### Prerequisites -You can just use the provided [Dockerfile](./Dockerfile). If you prefer to install dependencies manually, see below. +You should just use the [Dockerfile](./Dockerfile), but if you prefer to install dependencies manually, see below. ##### Linux @@ -43,3 +43,7 @@ make run-link-tgbl-wiki # Download `tgbn-trade` data, convert to `.tguf` and run examples/node_pred.cpp make run-node-tgbn-trade ``` + +### Python Bindings + +We expose [Python bindings](./python) for the `TGUFBuilder` via [nanobind](https://nanobind.readthedocs.io/en/latest/). diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt index 5fe6c9c..e290808 100644 --- a/python/CMakeLists.txt +++ b/python/CMakeLists.txt @@ -6,7 +6,6 @@ project( LANGUAGES CXX ) - if (CMAKE_VERSION VERSION_LESS 3.18) set(DEV_MODULE Development) else() diff --git a/python/README.md b/python/README.md index c4299e4..bdd2455 100644 --- a/python/README.md +++ b/python/README.md @@ -1 +1,50 @@ -#### Python bindings for tgn.cpp TGUFBuilder. +### tguf (Temporal Graph Universal Format) + +Python bindings for the `tgn.cpp` TGUF builder. + +### Prerequisites + +Requires [uv](https://docs.astral.sh/uv/) and C++20 toolchain. + +```sh +# Build an editable install with bindings from the project root +make python +``` + +### Quickstart + +Our bindings use zero-copy semantics to ingest any Python object supporting the DLPack or Buffer protocol (e.g., numpy.ndarray, torch.Tensor). + +```python +import tguf +import numpy as np +import torch + +# Define your tguf schema +schema = tguf.TGUFSchema( + path="my_data.tguf", + edge_capacity=10, + node_feat_capacity=5, + node_feat_dim=4, + msg_dim=8, +) +builder = tguf.TGUFBuilder(schema) + +# Stream some edge events +edge_batch = tguf.Batch( + src=np.array([0, 1], dtype=np.int64), + dst=np.array([2, 3], dtype=np.int64), + time=np.array([0, 1], dtype=np.int64), + msg=np.random.randn(2, 8), dtype=np.float32), +) +builder.append_edges(batch) + +# Stream through some node features +builder.append_node_feats( + n_id=torch.arange(5, dtype=torch.int64) # tensor's work too + node_feat = torch.randn(5, 4, dtype=torch.float32) +) + +# Finalize the .tguf file and flush to disk +builder.finalize() +``` diff --git a/python/nanobind/main.cpp b/python/nanobind/main.cpp index c4279bb..1466cef 100644 --- a/python/nanobind/main.cpp +++ b/python/nanobind/main.cpp @@ -5,6 +5,9 @@ #include #include +#include +#include +#include #include "tgn.h" diff --git a/python/pyproject.toml b/python/pyproject.toml index 7da6e88..a0fd335 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -6,7 +6,6 @@ readme = "README.md" requires-python = ">=3.10" dependencies = [] - [dependency-groups] dev = [ "pytest", diff --git a/python/test/test_bindings.py b/python/test/test_bindings.py index 2b8568d..fee850b 100644 --- a/python/test/test_bindings.py +++ b/python/test/test_bindings.py @@ -1,9 +1,10 @@ -import torch -import numpy as np -import pytest import tempfile from pathlib import Path + +import numpy as np +import pytest import tguf +import torch def get_data(lib, values, dtype): @@ -46,6 +47,7 @@ def test_batch_init(lib): msg=get_data(lib, np.random.randn(3, 8), "float32"), ) + @pytest.mark.parametrize("lib", ["torch", "numpy"]) def test_batch_init_with_negs(lib): tguf.Batch( diff --git a/python/tguf/__init__.py b/python/tguf/__init__.py index 1a7173a..3d75de2 100644 --- a/python/tguf/__init__.py +++ b/python/tguf/__init__.py @@ -1,3 +1,3 @@ -from ._core import TGUFBuilder, TGUFSchema, Batch +from ._core import Batch, TGUFBuilder, TGUFSchema __all__ = ["TGUFBuilder", "TGUFSchema", "Batch"]