are all backends supporting chopping?

[jkosinski]

This

AlphaPulldown/README.md

Line 55 in 8b465a3

- **Combinations**: `Q8I2G6:2:1-100+Q8I5K4` (dimer of residues 1-100 plus another protein)

is specified in common options - is the chopping/residue ranges supported by all backends now (including residue renumbering and chain)?

[DimaMolod]

yes when using af2 features, no for af3 json features

[jkosinski]

ok, that's fine for now and to fix in the future - in the meantime - what happens if someone attempts to actually use chopping with af3 features?

[DimaMolod]

Haven't tried but it is supposed to model the full chain ignoring the chopping:
https://github.com/KosinskiLab/AlphaPulldown/blob/main/alphapulldown/utils/modelling_setup.py#L86-L97

[jkosinski]

ok, so maybe we should block it for now similarly to the incompatible flags?