Bulkvis with conda

[HAHasani]

Hi,

I followed the installation steps for conda as discribed here; I have two basic questions please:

1. Do I still need to setup the config file?
2. I enabled bulk fast5 generation, yet my run contains the usual folders (fastq & fast5 with [pass,fail] each ). Since I never worked with bulk files before I don't know which extention they have and where to find them?

Could you please help?
Thank you

[alexomics]

Hi,

1. In the 2.0 branch (the current default) the config file is no longer required. Instead a default configuration is used.
2. The bulk file is usually written to the top level data directory. So if your run is saved in
   /data/<EXPERIMENT GROUP>/<SAMPLE ID>/<RUN>/ the bulk FAST5 file will be in /data/

[HAHasani]

Thanks alot, found it