NAMESPACE

# Generated by roxygen2: do not edit by hand

export(assembleComparisonConditionMapping)
export(clean_up_lfq_qc)
export(condition_name_decode_intensity_data)
export(condition_name_decode_intensity_data_tmt)
export(condition_name_decode_quantitative_data)
export(condition_name_encoder)
export(condition_name_encoder_tmt)
export(decodeComparisonConditionMapping)
export(detect_exp_type)
export(experiment_design_formatter)
export(experiment_design_reader)
export(generic_mq_table_reader)
export(getDownCondition)
export(getOriginalFromSafe)
export(getUpCondition)
export(get_lfq_intensity_columns)
export(get_protein_viz)
export(get_tmt_intensity_columns)
export(impute_lfq)
export(lfq_proteinGroup_txt_formatter)
export(lfq_quant_analysis)
export(lfq_read_data)
export(lfq_transformer)
export(limma_stats_fun)
export(make_id_link_table)
export(match_pattern_name)
export(oneProteinReplData)
export(parse_id_columns)
export(phospho_enrichment_quant)
export(prep_comparison_table)
export(protein_quant_runner)
export(remove_not_annotated_channels)
export(tmt_proteinGroup_txt_reader)
export(tmt_quant_analysis)
export(tmt_transformer)
export(verify_tmt_des)
export(write_output)
import(Biobase)
import(data.table)
import(dplyr)
import(foreach)
import(jsonlite)
import(limma)
importFrom(data.table,as.data.table)
importFrom(data.table,dcast.data.table)
importFrom(data.table,rbindlist)
importFrom(stringr,str_c)
importFrom(stringr,str_order)
importFrom(stringr,str_sort)