diff --git a/config/tool_config/multiqc_flowcell_config.yaml b/config/tool_config/multiqc_flowcell_config.yaml index 3c6205e..5830aef 100644 --- a/config/tool_config/multiqc_flowcell_config.yaml +++ b/config/tool_config/multiqc_flowcell_config.yaml @@ -17,5 +17,6 @@ table_columns_visible: top_modules: - 'custom_content' - 'bcl2fastq' + - 'bclconvert' - 'interop' diff --git a/main.nf b/main.nf index 836f468..fd5d72f 100644 --- a/main.nf +++ b/main.nf @@ -130,7 +130,7 @@ workflow CHECK_RUN_QUALITY { main: if (params.demultiplexer == 'bclconvert') { Channel.fromPath([ - "${params.run_folder}/${params.demultiplexer_outdir}/Reports/*.csv", + "${params.run_folder}/${params.demultiplexer_outdir}/Stats/*.csv", "${params.run_folder}/RunInfo.xml"]) .collect().ifEmpty([]) .set { demux_stats } diff --git a/test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Reports/Adapter_Metrics.csv b/test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Stats/Adapter_Metrics.csv similarity index 100% rename from test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Reports/Adapter_Metrics.csv rename to test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Stats/Adapter_Metrics.csv diff --git a/test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Reports/Demultiplex_Stats.csv b/test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Stats/Demultiplex_Stats.csv similarity index 100% rename from test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Reports/Demultiplex_Stats.csv rename to test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Stats/Demultiplex_Stats.csv diff --git a/test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Reports/Quality_Metrics.csv b/test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Stats/Quality_Metrics.csv similarity index 100% rename from test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Reports/Quality_Metrics.csv rename to test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Stats/Quality_Metrics.csv diff --git a/test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Reports/RunInfo.xml b/test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Stats/RunInfo.xml similarity index 100% rename from test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Reports/RunInfo.xml rename to test_data/230825_M04034_0043_000000000-L6NVV/Unaligned/Stats/RunInfo.xml