diff --git a/README.md b/README.md
index 6a8f38a..71a88c0 100644
--- a/README.md
+++ b/README.md
@@ -49,17 +49,14 @@ Options:
   --help  Show this message and exit.
 
 Commands:
-  download-all-public-raw-files   Download all public raw files...
-  download-file-by-name           Download a single file from a...
-  get-files-by-filter             get paged files :return:
-  get-files-by-project-accession  get files by project accession...
-  get-private-files               Get private files by project...
-  get-projects                    get paged projects :return:
-  get-projects-by-accession       get projects by accession... 
-  stream-files-metadata           Stream all files metadata in...
-  stream-projects-metadata        Stream all projects metadata...
-  search-projects-by-keywords-and-filters Search all projects by keywords...
-    
+  download-all-public-raw-files       Download all public raw files...
+  download-all-public-category-files  Download all public files of specific category...
+  download-file-by-name               Download a single file from a...
+  download-px-raw-files               Download all raw files referenced by a ProteomeXchange...
+  list-private-files                  List private files by project accession...
+  search-projects-by-keywords-and-filters  Search all projects by keywords...
+  stream-files-metadata               Stream all files metadata in...
+  stream-projects-metadata            Stream all projects metadata...
 ```
 > [!NOTE]
 > Please make sure you are using Python3, not Python 2.7 version.
@@ -118,7 +115,7 @@ Users may be interested in downloading files by category. Here is how to downloa
 - FASTA: FASTA files
 
 ```bash
-$ pridepy download-files-by-category -a PXD022105 -o /Users/yourname/Downloads/foldername/ -c RAW -p ftp
+$ pridepy download-all-public-category-files -a PXD022105 -o /Users/yourname/Downloads/foldername/ -c RAW -p ftp
 ```
 
 Please be aware that the additional parameters are the same as the previous command [Downloading a project from PRIDE Archive](#downloading-a-project-from-pride-archive).
@@ -173,7 +170,7 @@ $ pridepy stream-files-metadata -o PXD005011_files.json -a PXD005011
 Get the Project metadata by keywords and filters
 
 ```bash
-$  python -m pridepy.pridepy search-projects-by-keywords-and-filters -f projectTags==Proteometools,organismsPart==Pancreas -k human -sd DESC -sf accession -sf submissionDate
+$ pridepy search-projects-by-keywords-and-filters -f projectTags==Proteometools,organismsPart==Pancreas -k human -sd DESC -sf accession -sf submissionDate
 ```
 
 # White paper