.github/workflows/pr.yaml

Fix: Only keep refs and sources that exist to match dbt load time beh… #3026

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Run time

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Job	Run time
test-vscode-e2e	13m 1s
test-vscode	1m 7s
test-dbt-versions (1.3)	1m 58s
test-dbt-versions (1.5)	1m 34s
test-dbt-versions (1.4)	1m 46s
test-dbt-versions (1.6)	1m 29s
test-dbt-versions (1.8)	1m 38s
test-dbt-versions (1.9)	1m 45s
test-dbt-versions (1.7)	1m 41s
test-dbt-versions (1.10)	1m 41s
	27m 40s