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When I try to run fastq_screen --get_genomes, I get an error:
> fastq_screen --get_genomes
Downloading FastQ Screen Genomes
Connecting to www.bioinformatics.babraham.ac.uk (149.155.133.4:80)
wget: bad address 'www.bioinformatics.babraham.ac.ukprojects'
Could not run command 'wget --no-check-certificate www.bioinformatics.babraham.ac.uk/projects/fastq_screen/genome_locations.txt'What does work is to run the download from https, so maybe something with the redirect is off:
> wget --no-check-certificate https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/genome_locations.txt
Connecting to www.bioinformatics.babraham.ac.uk (149.155.133.4:443)
saving to 'genome_locations.txt'
genome_locations.txt 100% |********************************************************************************************************************************************************************| 190 0:00:00 ETA
'genome_locations.txt' savedSo, probably it could be fixed by changing this line to https:
Line 2468 in b9d0ebc
| my $location_file = 'www.bioinformatics.babraham.ac.uk/projects/fastq_screen/genome_locations.txt'; |
But it probably would be even better to get the download running with the old URL again, such that old versions still work.
I used FastQ-Screen version 0.16.0:
> fastq_screen --version
FastQ Screen v0.16.0Reactions are currently unavailable
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