From c8c52dcdba58a773e48882b47a438c37b47fb2cc Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sun, 1 Sep 2024 19:15:57 +0000 Subject: [PATCH 1/2] Bump the python-packages group across 1 directory with 28 updates Bumps the python-packages group with 28 updates in the / directory: | Package | From | To | | --- | --- | --- | | [nltk](https://github.com/nltk/nltk) | `3.8.1` | `3.9.1` | | [dash](https://github.com/plotly/dash) | `2.17.0` | `2.17.1` | | [dash-extensions](https://github.com/thedirtyfew/dash-extensions) | `1.0.15` | `1.0.18` | | [dash-cytoscape](https://github.com/plotly/dash-cytoscape) | `1.0.0` | `1.0.2` | | [tqdm](https://github.com/tqdm/tqdm) | `4.66.4` | `4.66.5` | | [fastparquet](https://github.com/dask/fastparquet) | `2024.2.0` | `2024.5.0` | | [transformers](https://github.com/huggingface/transformers) | `4.41.0` | `4.44.2` | | [sentence-transformers](https://github.com/UKPLab/sentence-transformers) | `2.7.0` | `3.0.1` | | [pyarrow](https://github.com/apache/arrow) | `16.1.0` | `17.0.0` | | [epochalyst](https://github.com/TeamEpochGithub/epochalyst) | `0.3.3` | `4.1.0` | | [hdbscan](https://github.com/scikit-learn-contrib/hdbscan) | `0.8.33` | `0.8.38.post1` | | [dask](https://github.com/dask/dask) | `2024.5.1` | `2024.8.2` | | [notebook](https://github.com/jupyter/notebook) | `7.2.0` | `7.2.2` | | [rustworkx](https://github.com/Qiskit/rustworkx) | `0.14.2` | `0.15.1` | | [polars](https://github.com/pola-rs/polars) | `0.20.26` | `1.6.0` | | [gensim](https://github.com/RaRe-Technologies/gensim) | `4.3.2` | `4.3.3` | | [pypdf](https://github.com/py-pdf/pypdf) | `4.2.0` | `4.3.1` | | [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.4.2` | `1.5.1` | | [pulp](https://github.com/coin-or/pulp) | `2.8.0` | `2.9.0` | | [scipy](https://github.com/scipy/scipy) | `1.12.0` | `1.13.1` | | [pre-commit](https://github.com/pre-commit/pre-commit) | `3.7.1` | `3.8.0` | | [pytest](https://github.com/pytest-dev/pytest) | `8.2.1` | `8.3.2` | | [reportlab](https://www.reportlab.com/) | `4.2.0` | `4.2.2` | | [sphinx](https://github.com/sphinx-doc/sphinx) | `7.2.6` | `7.3.7` | | [sphinx-autodoc-typehints](https://github.com/tox-dev/sphinx-autodoc-typehints) | `2.0.1` | `2.3.0` | | [sphinxawesome-theme](https://github.com/kai687/sphinxawesome-theme) | `5.1.4` | `5.2.0` | | [myst-parser](https://github.com/executablebooks/MyST-Parser) | `3.0.1` | `4.0.0` | | [pygit2](https://github.com/libgit2/pygit2) | `1.14.1` | `1.15.1` | Updates `nltk` from 3.8.1 to 3.9.1 - [Changelog](https://github.com/nltk/nltk/blob/develop/ChangeLog) - [Commits](https://github.com/nltk/nltk/compare/3.8.1...3.9.1) Updates `dash` from 2.17.0 to 2.17.1 - [Release notes](https://github.com/plotly/dash/releases) - [Changelog](https://github.com/plotly/dash/blob/dev/CHANGELOG.md) - [Commits](https://github.com/plotly/dash/compare/v2.17.0...v2.17.1) Updates `dash-extensions` from 1.0.15 to 1.0.18 - [Release notes](https://github.com/thedirtyfew/dash-extensions/releases) - [Changelog](https://github.com/emilhe/dash-extensions/blob/master/CHANGELOG.md) - [Commits](https://github.com/thedirtyfew/dash-extensions/compare/1.0.15...1.0.18) Updates `dash-cytoscape` from 1.0.0 to 1.0.2 - [Release notes](https://github.com/plotly/dash-cytoscape/releases) - [Commits](https://github.com/plotly/dash-cytoscape/compare/v1.0.0...v1.0.2) Updates `tqdm` from 4.66.4 to 4.66.5 - [Release notes](https://github.com/tqdm/tqdm/releases) - [Commits](https://github.com/tqdm/tqdm/compare/v4.66.4...v4.66.5) Updates `fastparquet` from 2024.2.0 to 2024.5.0 - [Commits](https://github.com/dask/fastparquet/compare/2024.2.0...2024.5.0) Updates `transformers` from 4.41.0 to 4.44.2 - [Release notes](https://github.com/huggingface/transformers/releases) - [Commits](https://github.com/huggingface/transformers/compare/v4.41.0...v4.44.2) Updates `sentence-transformers` from 2.7.0 to 3.0.1 - [Release notes](https://github.com/UKPLab/sentence-transformers/releases) - [Commits](https://github.com/UKPLab/sentence-transformers/compare/v2.7.0...v3.0.1) Updates `pyarrow` from 16.1.0 to 17.0.0 - [Release notes](https://github.com/apache/arrow/releases) - [Commits](https://github.com/apache/arrow/compare/r-16.1.0...go/v17.0.0) Updates `epochalyst` from 0.3.3 to 4.1.0 - [Release notes](https://github.com/TeamEpochGithub/epochalyst/releases) - [Commits](https://github.com/TeamEpochGithub/epochalyst/compare/v0.3.3...v4.1.0) Updates `hdbscan` from 0.8.33 to 0.8.38.post1 - [Release notes](https://github.com/scikit-learn-contrib/hdbscan/releases) - [Commits](https://github.com/scikit-learn-contrib/hdbscan/commits) Updates `dask` from 2024.5.1 to 2024.8.2 - [Release notes](https://github.com/dask/dask/releases) - [Changelog](https://github.com/dask/dask/blob/main/docs/release-procedure.md) - [Commits](https://github.com/dask/dask/compare/2024.5.1...2024.8.2) Updates `notebook` from 7.2.0 to 7.2.2 - [Release notes](https://github.com/jupyter/notebook/releases) - [Changelog](https://github.com/jupyter/notebook/blob/@jupyter-notebook/tree@7.2.2/CHANGELOG.md) - [Commits](https://github.com/jupyter/notebook/compare/@jupyter-notebook/tree@7.2.0...@jupyter-notebook/tree@7.2.2) Updates `rustworkx` from 0.14.2 to 0.15.1 - [Release notes](https://github.com/Qiskit/rustworkx/releases) - [Commits](https://github.com/Qiskit/rustworkx/compare/0.14.2...0.15.1) Updates `polars` from 0.20.26 to 1.6.0 - [Release notes](https://github.com/pola-rs/polars/releases) - [Commits](https://github.com/pola-rs/polars/compare/py-0.20.26...py-1.6.0) Updates `gensim` from 4.3.2 to 4.3.3 - [Release notes](https://github.com/RaRe-Technologies/gensim/releases) - [Changelog](https://github.com/piskvorky/gensim/blob/develop/CHANGELOG.md) - [Commits](https://github.com/RaRe-Technologies/gensim/compare/4.3.2...4.3.3) Updates `pypdf` from 4.2.0 to 4.3.1 - [Release notes](https://github.com/py-pdf/pypdf/releases) - [Changelog](https://github.com/py-pdf/pypdf/blob/main/CHANGELOG.md) - [Commits](https://github.com/py-pdf/pypdf/compare/4.2.0...4.3.1) Updates `scikit-learn` from 1.4.2 to 1.5.1 - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](https://github.com/scikit-learn/scikit-learn/compare/1.4.2...1.5.1) Updates `pulp` from 2.8.0 to 2.9.0 - [Release notes](https://github.com/coin-or/pulp/releases) - [Changelog](https://github.com/coin-or/pulp/blob/master/HISTORY) - [Commits](https://github.com/coin-or/pulp/compare/2.8.0...2.9.0) Updates `scipy` from 1.12.0 to 1.13.1 - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](https://github.com/scipy/scipy/compare/v1.12.0...v1.13.1) Updates `pre-commit` from 3.7.1 to 3.8.0 - [Release notes](https://github.com/pre-commit/pre-commit/releases) - [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md) - [Commits](https://github.com/pre-commit/pre-commit/compare/v3.7.1...v3.8.0) Updates `pytest` from 8.2.1 to 8.3.2 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/8.2.1...8.3.2) Updates `reportlab` from 4.2.0 to 4.2.2 Updates `sphinx` from 7.2.6 to 7.3.7 - [Release notes](https://github.com/sphinx-doc/sphinx/releases) - [Changelog](https://github.com/sphinx-doc/sphinx/blob/v7.3.7/CHANGES.rst) - [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.6...v7.3.7) Updates `sphinx-autodoc-typehints` from 2.0.1 to 2.3.0 - [Release notes](https://github.com/tox-dev/sphinx-autodoc-typehints/releases) - [Changelog](https://github.com/tox-dev/sphinx-autodoc-typehints/blob/main/CHANGELOG.md) - [Commits](https://github.com/tox-dev/sphinx-autodoc-typehints/compare/2.0.1...2.3.0) Updates `sphinxawesome-theme` from 5.1.4 to 5.2.0 - [Release notes](https://github.com/kai687/sphinxawesome-theme/releases) - [Commits](https://github.com/kai687/sphinxawesome-theme/compare/5.1.4...5.2.0) Updates `myst-parser` from 3.0.1 to 4.0.0 - [Release notes](https://github.com/executablebooks/MyST-Parser/releases) - [Changelog](https://github.com/executablebooks/MyST-Parser/blob/master/CHANGELOG.md) - [Commits](https://github.com/executablebooks/MyST-Parser/compare/v3.0.1...v4.0.0) Updates `pygit2` from 1.14.1 to 1.15.1 - [Changelog](https://github.com/libgit2/pygit2/blob/master/CHANGELOG.md) - [Commits](https://github.com/libgit2/pygit2/compare/v1.14.1...v1.15.1) --- updated-dependencies: - dependency-name: nltk dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: dash dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: dash-extensions dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: dash-cytoscape dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: tqdm dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: fastparquet dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: transformers dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: sentence-transformers dependency-type: direct:production update-type: version-update:semver-major dependency-group: python-packages - dependency-name: pyarrow dependency-type: direct:production update-type: version-update:semver-major dependency-group: python-packages - dependency-name: epochalyst dependency-type: direct:production update-type: version-update:semver-major dependency-group: python-packages - dependency-name: hdbscan dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: dask dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: notebook dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: rustworkx dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: polars dependency-type: direct:production update-type: version-update:semver-major dependency-group: python-packages - dependency-name: gensim dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: pypdf dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: scikit-learn dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: pulp dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: scipy dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: pre-commit dependency-type: direct:development update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: reportlab dependency-type: direct:development update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: sphinx dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: sphinx-autodoc-typehints dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: sphinxawesome-theme dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: myst-parser dependency-type: direct:production update-type: version-update:semver-major dependency-group: python-packages - dependency-name: pygit2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages ... Signed-off-by: dependabot[bot] --- poetry.lock | 995 +++++++++++++++++++++++++++---------------------- pyproject.toml | 56 +-- 2 files changed, 570 insertions(+), 481 deletions(-) diff --git a/poetry.lock b/poetry.lock index b6ae096..953ce40 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. [[package]] name = "accelerate" @@ -56,6 +56,17 @@ files = [ {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, ] +[[package]] +name = "annotated-types" +version = "0.7.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.8" +files = [ + {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, + {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, +] + [[package]] name = "antlr4-python3-runtime" version = "4.9.3" @@ -911,66 +922,15 @@ files = [ docs = ["ipython", "matplotlib", "numpydoc", "sphinx"] tests = ["pytest", "pytest-cov", "pytest-xdist"] -[[package]] -name = "cython" -version = "0.29.37" -description = "The Cython compiler for writing C extensions for the Python language." -optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" -files = [ - 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(==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "isort (>=5.5.4)", "kenlm", "keras-nlp (>=0.3.1,<0.14.0)", "librosa", "nltk", "onnxconverter-common", "onnxruntime (>=1.4.0)", "onnxruntime-tools (>=1.4.2)", "parameterized", "phonemizer", "protobuf", "psutil", "pyctcdecode (>=0.4.0)", "pydantic", "pytest (>=7.2.0,<8.0.0)", "pytest-rich", "pytest-timeout", "pytest-xdist", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "ruff (==0.5.1)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "scikit-learn", "sentencepiece (>=0.1.91,!=0.1.92)", "tensorboard", "tensorflow (>2.9,<2.16)", "tensorflow-text (<2.16)", "tf2onnx", "timeout-decorator", "tokenizers (>=0.19,<0.20)", "urllib3 (<2.0.0)"] +dev-torch = ["GitPython (<3.1.19)", "Pillow (>=10.0.1,<=15.0)", "accelerate (>=0.21.0)", "beautifulsoup4", "codecarbon (==1.2.0)", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "fugashi (>=1.0)", "ipadic (>=1.0.0,<2.0)", "isort (>=5.5.4)", "kenlm", "librosa", "nltk", "onnxruntime (>=1.4.0)", "onnxruntime-tools (>=1.4.2)", "optuna", "parameterized", "phonemizer", "protobuf", "psutil", "pyctcdecode (>=0.4.0)", "pydantic", "pytest (>=7.2.0,<8.0.0)", "pytest-rich", "pytest-timeout", "pytest-xdist", "ray[tune] (>=2.7.0)", "rhoknp (>=1.1.0,<1.3.1)", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "ruff (==0.5.1)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "scikit-learn", "sentencepiece (>=0.1.91,!=0.1.92)", "sigopt", "sudachidict-core (>=20220729)", "sudachipy (>=0.6.6)", "tensorboard", "timeout-decorator", "timm (<=0.9.16)", "tokenizers (>=0.19,<0.20)", "torch", "torchaudio", "torchvision", "unidic (>=1.0.2)", "unidic-lite (>=1.0.7)", "urllib3 (<2.0.0)"] flax = ["flax (>=0.4.1,<=0.7.0)", "jax (>=0.4.1,<=0.4.13)", "jaxlib (>=0.4.1,<=0.4.13)", "optax (>=0.0.8,<=0.1.4)", "scipy (<1.13.0)"] flax-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)"] ftfy = ["ftfy"] @@ -5511,25 +5599,26 @@ natten = ["natten (>=0.14.6,<0.15.0)"] onnx = ["onnxconverter-common", "onnxruntime (>=1.4.0)", "onnxruntime-tools (>=1.4.2)", "tf2onnx"] onnxruntime = ["onnxruntime (>=1.4.0)", "onnxruntime-tools (>=1.4.2)"] optuna = ["optuna"] -quality = ["GitPython (<3.1.19)", "datasets (!=2.5.0)", "isort (>=5.5.4)", "ruff (==0.1.5)", "urllib3 (<2.0.0)"] +quality = ["GitPython (<3.1.19)", "datasets (!=2.5.0)", "isort (>=5.5.4)", "ruff (==0.5.1)", "urllib3 (<2.0.0)"] ray = ["ray[tune] (>=2.7.0)"] retrieval = ["datasets (!=2.5.0)", "faiss-cpu"] +ruff = ["ruff (==0.5.1)"] sagemaker = ["sagemaker (>=2.31.0)"] sentencepiece = ["protobuf", "sentencepiece (>=0.1.91,!=0.1.92)"] serving = ["fastapi", "pydantic", "starlette", "uvicorn"] sigopt = ["sigopt"] sklearn = ["scikit-learn"] speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)", "torchaudio"] -testing = ["GitPython (<3.1.19)", "beautifulsoup4", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "nltk", "parameterized", "psutil", "pydantic", "pytest (>=7.2.0,<8.0.0)", "pytest-rich", "pytest-timeout", "pytest-xdist", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "ruff (==0.1.5)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "sentencepiece (>=0.1.91,!=0.1.92)", "tensorboard", "timeout-decorator"] -tf = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow (>2.9,<2.16)", "tensorflow-text (<2.16)", "tf2onnx"] -tf-cpu = ["keras (>2.9,<2.16)", "keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow-cpu (>2.9,<2.16)", "tensorflow-probability (<2.16)", "tensorflow-text (<2.16)", "tf2onnx"] +testing = ["GitPython (<3.1.19)", "beautifulsoup4", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "nltk", "parameterized", "psutil", "pydantic", "pytest (>=7.2.0,<8.0.0)", "pytest-rich", "pytest-timeout", "pytest-xdist", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "ruff (==0.5.1)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "sentencepiece (>=0.1.91,!=0.1.92)", "tensorboard", "timeout-decorator"] +tf = ["keras-nlp (>=0.3.1,<0.14.0)", "onnxconverter-common", "tensorflow (>2.9,<2.16)", "tensorflow-text (<2.16)", "tf2onnx"] +tf-cpu = ["keras (>2.9,<2.16)", "keras-nlp (>=0.3.1,<0.14.0)", "onnxconverter-common", "tensorflow-cpu (>2.9,<2.16)", "tensorflow-probability (<0.24)", "tensorflow-text (<2.16)", "tf2onnx"] tf-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)"] -timm = ["timm"] +timm = ["timm (<=0.9.16)"] tokenizers = ["tokenizers (>=0.19,<0.20)"] torch = ["accelerate (>=0.21.0)", "torch"] torch-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)", "torchaudio"] torch-vision = ["Pillow (>=10.0.1,<=15.0)", "torchvision"] -torchhub = ["filelock", "huggingface-hub (>=0.23.0,<1.0)", "importlib-metadata", "numpy (>=1.17)", "packaging (>=20.0)", "protobuf", "regex (!=2019.12.17)", "requests", "sentencepiece (>=0.1.91,!=0.1.92)", "tokenizers (>=0.19,<0.20)", "torch", "tqdm (>=4.27)"] +torchhub = ["filelock", "huggingface-hub (>=0.23.2,<1.0)", "importlib-metadata", "numpy (>=1.17)", "packaging (>=20.0)", "protobuf", "regex (!=2019.12.17)", "requests", "sentencepiece (>=0.1.91,!=0.1.92)", "tokenizers (>=0.19,<0.20)", "torch", "tqdm (>=4.27)"] video = ["av (==9.2.0)", "decord (==0.6.0)"] vision = ["Pillow (>=10.0.1,<=15.0)"] @@ -5546,13 +5635,13 @@ files = [ [[package]] name = "typing-extensions" -version = "4.11.0" +version = "4.12.2" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" files = [ - {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"}, - {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"}, + {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"}, + {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"}, ] [[package]] @@ -5855,4 +5944,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more [metadata] lock-version = "2.0" python-versions = "^3.12" -content-hash = "7048030fcb0013ffaf00d7f71eed702b4d15e512e215aab4988076d6f55e0322" +content-hash = "c128a2d357d023399f8d127138bb54ae011603cd1e35c3f0cedd1e2196d626ed" diff --git a/pyproject.toml b/pyproject.toml index bec0a96..5e68398 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -35,32 +35,32 @@ python = "^3.12" numpy = "^1.26.4" seaborn = "^0.13.2" yake = "^0.4.8" -nltk = "^3.8.1" -dash = "^2.16.0" -dash-extensions = "^1.0.12" -dash-cytoscape = "^1.0.0" +nltk = "^3.9.1" +dash = "^2.17.1" +dash-extensions = "^1.0.18" +dash-cytoscape = "^1.0.2" hydra-core = "^1.3.2" -tqdm = "^4.66.2" -fastparquet = "^2024.2.0" -transformers = {extras = ["torch"], version = "^4.38.2"} -sentence-transformers = "^2.5.1" +tqdm = "^4.66.5" +fastparquet = "^2024.5.0" +transformers = {extras = ["torch"], version = "^4.44.2"} +sentence-transformers = "^3.0.1" lexrank = "^0.1.0" pandas = {extras = ["performance"], version = "^2.2.1"} -pyarrow = "^16.0.0" -epochalyst = "^0.3.2" -hdbscan = "^0.8.33" -dask = {extras = ["dataframe"], version = "^2024.3.1"} -notebook = "^7.1.2" +pyarrow = "^17.0.0" +epochalyst = "^4.1.0" +hdbscan = "^0.8.38" +dask = {extras = ["dataframe"], version = "^2024.8.2"} +notebook = "^7.2.2" dash-mantine-components = "~0.12.1" dash-iconify = "^0.1.2" -rustworkx = "^0.14.2" -polars = "^0.20.25" -gensim = "^4.3.2" -pypdf = {extras = ["full"], version = "^4.1.0"} -scikit-learn = "^1.4.1.post1" -pulp = "^2.8.0" +rustworkx = "^0.15.1" +polars = "^1.6.0" +gensim = "^4.3.3" +pypdf = {extras = ["full"], version = "^4.3.1"} +scikit-learn = "^1.5.1" +pulp = "^2.9.0" umap-learn = "^0.5.6" -scipy = "~1.12.0" +scipy = "~1.13.1" randomname = "^0.2.1" flask = "^3.0.3" networkx = "^3.3" @@ -68,19 +68,19 @@ networkx = "^3.3" [tool.poetry.group.test] [tool.poetry.group.test.dependencies] -pre-commit = "^3.6.2" -pytest = "^8.2.0" +pre-commit = "^3.8.0" +pytest = "^8.3.2" pytest-cov = "^5.0.0" -reportlab = "^4.1.0" +reportlab = "^4.2.2" [tool.poetry.group.docs] [tool.poetry.group.docs.dependencies] -sphinx = "^7.2.6" -sphinx-autodoc-typehints = "^2.0.1" -sphinxawesome-theme = "^5.1.4" -myst-parser = "^3.0.1" -pygit2 = "^1.14.1" +sphinx = "^7.3.7" +sphinx-autodoc-typehints = "^2.3.0" +sphinxawesome-theme = "^5.2.0" +myst-parser = "^4.0.0" +pygit2 = "^1.15.1" sphinxcontrib-bibtex = "^2.6.2" From 648851031456e63d619317f90454ba64fa5d0899 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Sun, 1 Sep 2024 19:16:20 +0000 Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- requirements.txt | 73 +++++++++++++++++++++++++----------------------- 1 file changed, 38 insertions(+), 35 deletions(-) diff --git a/requirements.txt b/requirements.txt index 3393a93..efd88ed 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,6 +1,7 @@ accelerate==0.30.1 ; python_version >= "3.12" and python_version < "4.0" agogos==0.4 ; python_version >= "3.12" and python_version < "4.0" alabaster==0.7.16 ; python_version >= "3.12" and python_version < "4.0" +annotated-types==0.7.0 ; python_version >= "3.12" and python_version < "4.0" antlr4-python3-runtime==4.9.3 ; python_version >= "3.12" and python_version < "4.0" anyio==4.3.0 ; python_version >= "3.12" and python_version < "4.0" appnope==0.1.4 ; python_version >= "3.12" and python_version < "4.0" and platform_system == "Darwin" @@ -30,18 +31,17 @@ coverage[toml]==7.5.1 ; python_version >= "3.12" and python_version < "4.0" cramjam==2.8.3 ; python_version >= "3.12" and python_version < "4.0" cryptography==42.0.7 ; python_version >= "3.12" and python_version < "4.0" cycler==0.12.1 ; python_version >= "3.12" and python_version < "4.0" -cython==0.29.37 ; python_version >= "3.12" and python_version < "4.0" dash-core-components==2.0.0 ; python_version >= "3.12" and python_version < "4.0" -dash-cytoscape==1.0.0 ; python_version >= "3.12" and python_version < "4.0" -dash-extensions==1.0.15 ; python_version >= "3.12" and python_version < "4" +dash-cytoscape==1.0.2 ; python_version >= "3.12" and python_version < "4.0" +dash-extensions==1.0.18 ; python_version >= "3.12" and python_version < "4" dash-html-components==2.0.0 ; python_version >= "3.12" and python_version < "4.0" dash-iconify==0.1.2 ; python_version >= "3.12" and python_version < "4.0" dash-mantine-components==0.12.1 ; python_version >= "3.12" and python_version < "4.0" dash-table==5.0.0 ; python_version >= "3.12" and python_version < "4.0" -dash==2.17.0 ; python_version >= "3.12" and python_version < "4.0" -dask-expr==1.1.1 ; python_version >= "3.12" and python_version < "4.0" -dask==2024.5.1 ; python_version >= "3.12" and python_version < "4.0" -dask[dataframe]==2024.5.1 ; python_version >= "3.12" and python_version < "4.0" +dash==2.17.1 ; python_version >= "3.12" and python_version < "4.0" +dask-expr==1.1.12 ; python_version >= "3.12" and python_version < "4.0" +dask==2024.8.2 ; python_version >= "3.12" and python_version < "4.0" +dask[dataframe]==2024.8.2 ; python_version >= "3.12" and python_version < "4.0" dataclass-wizard==0.22.3 ; python_version >= "3.12" and python_version < "4" debugpy==1.8.1 ; python_version >= "3.12" and python_version < "4.0" decorator==5.1.1 ; python_version >= "3.12" and python_version < "4.0" @@ -49,10 +49,10 @@ defusedxml==0.7.1 ; python_version >= "3.12" and python_version < "4.0" distlib==0.3.8 ; python_version >= "3.12" and python_version < "4.0" docutils==0.20.1 ; python_version >= "3.12" and python_version < "4.0" editorconfig==0.12.4 ; python_version >= "3.12" and python_version < "4" -epochalyst==0.3.3 ; python_version >= "3.12" and python_version < "4.0" +epochalyst==4.1.0 ; python_version >= "3.12" and python_version < "4.0" executing==2.0.1 ; python_version >= "3.12" and python_version < "4.0" fastjsonschema==2.19.1 ; python_version >= "3.12" and python_version < "4.0" -fastparquet==2024.2.0 ; python_version >= "3.12" and python_version < "4.0" +fastparquet==2024.5.0 ; python_version >= "3.12" and python_version < "4.0" filelock==3.14.0 ; python_version >= "3.12" and python_version < "4.0" fire==0.6.0 ; python_version >= "3.12" and python_version < "4.0" flask-caching==2.3.0 ; python_version >= "3.12" and python_version < "4" @@ -60,12 +60,12 @@ flask==3.0.3 ; python_version >= "3.12" and python_version < "4.0" fonttools==4.51.0 ; python_version >= "3.12" and python_version < "4.0" fqdn==1.5.1 ; python_version >= "3.12" and python_version < "4" fsspec==2024.5.0 ; python_version >= "3.12" and python_version < "4.0" -gensim==4.3.2 ; python_version >= "3.12" and python_version < "4.0" +gensim==4.3.3 ; python_version >= "3.12" and python_version < "4.0" h11==0.14.0 ; python_version >= "3.12" and python_version < "4.0" -hdbscan==0.8.33 ; python_version >= "3.12" and python_version < "4.0" +hdbscan==0.8.38.post1 ; python_version >= "3.12" and python_version < "4.0" httpcore==1.0.5 ; python_version >= "3.12" and python_version < "4.0" httpx==0.27.0 ; python_version >= "3.12" and python_version < "4.0" -huggingface-hub==0.23.0 ; python_version >= "3.12" and python_version < "4.0" +huggingface-hub==0.24.6 ; python_version >= "3.12" and python_version < "4.0" hydra-core==1.3.2 ; python_version >= "3.12" and python_version < "4.0" identify==2.5.36 ; python_version >= "3.12" and python_version < "4.0" idna==3.7 ; python_version >= "3.12" and python_version < "4.0" @@ -109,18 +109,18 @@ mdit-py-plugins==0.4.1 ; python_version >= "3.12" and python_version < "4.0" mdurl==0.1.2 ; python_version >= "3.12" and python_version < "4.0" mistune==3.0.2 ; python_version >= "3.12" and python_version < "4.0" mkl==2021.4.0 ; python_version >= "3.12" and python_version < "4.0" and platform_system == "Windows" -more-itertools==9.1.0 ; python_version >= "3.12" and python_version < "4" +more-itertools==10.4.0 ; python_version >= "3.12" and python_version < "4" mpmath==1.3.0 ; python_version >= "3.12" and python_version < "4.0" -myst-parser==3.0.1 ; python_version >= "3.12" and python_version < "4.0" +myst-parser==4.0.0 ; python_version >= "3.12" and python_version < "4.0" nbclient==0.10.0 ; python_version >= "3.12" and python_version < "4.0" nbconvert==7.16.4 ; python_version >= "3.12" and python_version < "4.0" nbformat==5.10.4 ; python_version >= "3.12" and python_version < "4.0" nest-asyncio==1.6.0 ; python_version >= "3.12" and python_version < "4.0" networkx==3.3 ; python_version >= "3.12" and python_version < "4.0" -nltk==3.8.1 ; python_version >= "3.12" and python_version < "4.0" +nltk==3.9.1 ; python_version >= "3.12" and python_version < "4.0" nodeenv==1.8.0 ; python_version >= "3.12" and python_version < "4.0" notebook-shim==0.2.4 ; python_version >= "3.12" and python_version < "4.0" -notebook==7.2.0 ; python_version >= "3.12" and python_version < "4.0" +notebook==7.2.2 ; python_version >= "3.12" and python_version < "4.0" numba==0.59.1 ; python_version >= "3.12" and python_version < "4.0" numexpr==2.10.0 ; python_version >= "3.12" and python_version < "4.0" numpy==1.26.4 ; python_version >= "3.12" and python_version < "4.0" @@ -151,26 +151,28 @@ pillow==10.3.0 ; python_version >= "3.12" and python_version < "4.0" platformdirs==4.2.2 ; python_version >= "3.12" and python_version < "4.0" plotly==5.22.0 ; python_version >= "3.12" and python_version < "4.0" pluggy==1.5.0 ; python_version >= "3.12" and python_version < "4.0" -polars==0.20.26 ; python_version >= "3.12" and python_version < "4.0" -pre-commit==3.7.1 ; python_version >= "3.12" and python_version < "4.0" +polars==1.6.0 ; python_version >= "3.12" and python_version < "4.0" +pre-commit==3.8.0 ; python_version >= "3.12" and python_version < "4.0" prometheus-client==0.20.0 ; python_version >= "3.12" and python_version < "4.0" prompt-toolkit==3.0.43 ; python_version >= "3.12" and python_version < "4.0" psutil==5.9.8 ; python_version >= "3.12" and python_version < "4.0" ptyprocess==0.7.0 ; python_version >= "3.12" and python_version < "4.0" and (os_name != "nt" or sys_platform != "win32" and sys_platform != "emscripten") -pulp==2.8.0 ; python_version >= "3.12" and python_version < "4.0" +pulp==2.9.0 ; python_version >= "3.12" and python_version < "4.0" pure-eval==0.2.2 ; python_version >= "3.12" and python_version < "4.0" -pyarrow==16.1.0 ; python_version >= "3.12" and python_version < "4.0" +pyarrow==17.0.0 ; python_version >= "3.12" and python_version < "4.0" pybtex-docutils==1.0.3 ; python_version >= "3.12" and python_version < "4.0" pybtex==0.24.0 ; python_version >= "3.12" and python_version < "4.0" pycparser==2.22 ; python_version >= "3.12" and python_version < "4.0" -pygit2==1.15.0 ; python_version >= "3.12" and python_version < "4.0" +pydantic-core==2.20.1 ; python_version >= "3.12" and python_version < "4" +pydantic==2.8.2 ; python_version >= "3.12" and python_version < "4" +pygit2==1.15.1 ; python_version >= "3.12" and python_version < "4.0" pygments==2.18.0 ; python_version >= "3.12" and python_version < "4.0" pynndescent==0.5.12 ; python_version >= "3.12" and python_version < "4.0" pyparsing==3.1.2 ; python_version >= "3.12" and python_version < "4.0" -pypdf[full]==4.2.0 ; python_version >= "3.12" and python_version < "4.0" +pypdf[full]==4.3.1 ; python_version >= "3.12" and python_version < "4.0" pyrsistent==0.20.0 ; python_version >= "3.12" and python_version < "4.0" pytest-cov==5.0.0 ; python_version >= "3.12" and python_version < "4.0" -pytest==8.2.1 ; python_version >= "3.12" and python_version < "4.0" +pytest==8.3.2 ; python_version >= "3.12" and python_version < "4.0" python-dateutil==2.9.0.post0 ; python_version >= "3.12" and python_version < "4.0" python-json-logger==2.0.7 ; python_version >= "3.12" and python_version < "4.0" pytz==2024.1 ; python_version >= "3.12" and python_version < "4.0" @@ -181,29 +183,30 @@ pyzmq==26.0.3 ; python_version >= "3.12" and python_version < "4.0" randomname==0.2.1 ; python_version >= "3.12" and python_version < "4.0" referencing==0.35.1 ; python_version >= "3.12" and python_version < "4.0" regex==2024.5.15 ; python_version >= "3.12" and python_version < "4.0" -reportlab==4.2.0 ; python_version >= "3.12" and python_version < "4" +reportlab==4.2.2 ; python_version >= "3.12" and python_version < "4" requests==2.32.0 ; python_version >= "3.12" and python_version < "4.0" retrying==1.3.4 ; python_version >= "3.12" and python_version < "4.0" rfc3339-validator==0.1.4 ; python_version >= "3.12" and python_version < "4.0" rfc3986-validator==0.1.1 ; python_version >= "3.12" and python_version < "4.0" rpds-py==0.18.1 ; python_version >= "3.12" and python_version < "4.0" -rustworkx==0.14.2 ; python_version >= "3.12" and python_version < "4.0" +ruff==0.4.10 ; python_version >= "3.12" and python_version < "4" +rustworkx==0.15.1 ; python_version >= "3.12" and python_version < "4.0" safetensors==0.4.3 ; python_version >= "3.12" and python_version < "4.0" -scikit-learn==1.4.2 ; python_version >= "3.12" and python_version < "4.0" -scipy==1.12.0 ; python_version >= "3.12" and python_version < "4.0" +scikit-learn==1.5.1 ; python_version >= "3.12" and python_version < "4.0" +scipy==1.13.1 ; python_version >= "3.12" and python_version < "4.0" seaborn==0.13.2 ; python_version >= "3.12" and python_version < "4.0" segtok==1.5.11 ; python_version >= "3.12" and python_version < "4.0" send2trash==1.8.3 ; python_version >= "3.12" and python_version < "4.0" -sentence-transformers==2.7.0 ; python_version >= "3.12" and python_version < "4.0" +sentence-transformers==3.0.1 ; python_version >= "3.12" and python_version < "4.0" setuptools==69.5.1 ; python_version >= "3.12" and python_version < "4.0" six==1.16.0 ; python_version >= "3.12" and python_version < "4.0" smart-open==7.0.4 ; python_version >= "3.12" and python_version < "4.0" sniffio==1.3.1 ; python_version >= "3.12" and python_version < "4.0" snowballstemmer==2.2.0 ; python_version >= "3.12" and python_version < "4.0" soupsieve==2.5 ; python_version >= "3.12" and python_version < "4.0" -sphinx-autodoc-typehints==2.0.1 ; python_version >= "3.12" and python_version < "4.0" -sphinx==7.2.6 ; python_version >= "3.12" and python_version < "4.0" -sphinxawesome-theme==5.1.4 ; python_version >= "3.12" and python_version < "4.0" +sphinx-autodoc-typehints==2.3.0 ; python_version >= "3.12" and python_version < "4.0" +sphinx==7.3.7 ; python_version >= "3.12" and python_version < "4.0" +sphinxawesome-theme==5.2.0 ; python_version >= "3.12" and python_version < "4.0" sphinxcontrib-applehelp==1.0.8 ; python_version >= "3.12" and python_version < "4.0" sphinxcontrib-bibtex==2.6.2 ; python_version >= "3.12" and python_version < "4.0" sphinxcontrib-devhelp==1.0.6 ; python_version >= "3.12" and python_version < "4.0" @@ -224,12 +227,12 @@ tokenizers==0.19.1 ; python_version >= "3.12" and python_version < "4.0" toolz==0.12.1 ; python_version >= "3.12" and python_version < "4.0" torch==2.3.0 ; python_version >= "3.12" and python_version < "4.0" tornado==6.4 ; python_version >= "3.12" and python_version < "4.0" -tqdm==4.66.4 ; python_version >= "3.12" and python_version < "4.0" +tqdm==4.66.5 ; python_version >= "3.12" and python_version < "4.0" traitlets==5.14.3 ; python_version >= "3.12" and python_version < "4.0" -transformers==4.41.0 ; python_version >= "3.12" and python_version < "4.0" -transformers[torch]==4.41.0 ; python_version >= "3.12" and python_version < "4.0" +transformers==4.44.2 ; python_version >= "3.12" and python_version < "4.0" +transformers[torch]==4.44.2 ; python_version >= "3.12" and python_version < "4.0" types-python-dateutil==2.9.0.20240316 ; python_version >= "3.12" and python_version < "4.0" -typing-extensions==4.11.0 ; python_version >= "3.12" and python_version < "4.0" +typing-extensions==4.12.2 ; python_version >= "3.12" and python_version < "4.0" tzdata==2024.1 ; python_version >= "3.12" and python_version < "4.0" umap-learn==0.5.6 ; python_version >= "3.12" and python_version < "4.0" uri-template==1.3.0 ; python_version >= "3.12" and python_version < "4.0"