[BioNet] Integrate MSstatsResponse with Network Visualization

[tonywu1999]

Story

Right now, the output of MSstatsResponse is not compatible with the functions of network visualization. The input of network visualization is typically a table with the following columns:

• Protein
• log2FC
• adj.pvalue

MSstatsResponse outputs the columns

• Protein
• Fstatistic (magnitude of how significant the response is)
• IC50 (dose amount in which the response goes to 50%)
• adj.pvalue

We also know if the response is increasing or decreasing.

Update: Sarah mentioned we should add a log2FC column in the output of MSstatsResponse, indicating the estimated log2FC change between control and the last timepoint/dose.

Subtasks

• Meet with Sarah
• Add the log2FC column in output of MSstatsResponse based on the description above.
• Verify MSstatsShiny network visualization runs adequately after creating dose response curves.