Issue with running example

[rdutta1022]

Hi,

I am getting the following error when trying to run the example (with the following command: python3 Intervar.py -i example/ex1.avinput -o example/myanno). Would love any help in troubleshooting, thank you so much!

NOTICE: Running with system command <coding_change.pl example/myanno.refGene.exonic_variant_function.orig humandb/hg19_refGene.txt humandb/hg19_refGeneMrna.fa -alltranscript -out example/myanno.refGene.fa -newevf example/myanno.refGene.exonic_variant_function>
Can't exec "coding_change.pl": No such file or directory at ./table_annovar.pl line 455.
Error running system command: <coding_change.pl example/myanno.refGene.exonic_variant_function.orig humandb/hg19_refGene.txt humandb/hg19_refGeneMrna.fa -alltranscript -out example/myanno.refGene.fa -newevf example/myanno.refGene.exonic_variant_function>
Warning: Customized disease cutoff 0.01 in config.ini, not suggested as 0.005
Warning: The InterVar seems not run correctly, please check your inputs , options and configure file!
ERROR: The InterVar did not find the annotation result file from ANNOVAR!
ERROR: The name of annotation result file should be like example/myanno*.hg19__multianno.txt

[quanliustc]

please download Annovar tool and put all the perl scripts in the InterVar folder