diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 5f73c1c..2208878 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -53,9 +53,9 @@ jobs: fail-fast: false matrix: config: - - { os: ubuntu-latest, r: 'devel', bioc: '3.21', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" } - - { os: macOS-latest, r: 'devel', bioc: '3.21'} - - { os: windows-latest, r: 'devel', bioc: '3.21'} + - { os: ubuntu-latest, r: 'devel', bioc: '3.23', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" } + - { os: macOS-latest, r: 'devel', bioc: '3.23'} + - { os: windows-latest, r: 'devel', bioc: '3.23'} ## Check https://github.com/r-lib/actions/tree/master/examples ## for examples using the http-user-agent env: diff --git a/DESCRIPTION b/DESCRIPTION index 69a97a5..8b2b8af 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -33,13 +33,14 @@ Suggests: BiocStyle, countrycode, knitr, + pak, rmarkdown, testthat (>= 3.0.0) biocViews: Software, DataImport, BiomedicalInformatics, Pharmacogenomics, Pharmacogenomics Encoding: UTF-8 ByteCompile: true Roxygen: list(markdown = TRUE) -RoxygenNote: 7.3.2 +RoxygenNote: 7.3.3 Config/testthat/edition: 3 Config/testthat/parallel: true VignetteBuilder: knitr diff --git a/R/import-standalone-pkg.R b/R/import-standalone-pkg.R index 0f4adb0..deed7e0 100644 --- a/R/import-standalone-pkg.R +++ b/R/import-standalone-pkg.R @@ -70,13 +70,13 @@ is_installed <- local({ } }) -install_pkgs <- function(pkgs) { - if (is_installed("pak")) { - getExportedValue("pak", "pkg_install")(pkgs, ask = FALSE) - } else { - utils::install.packages(pkgs) - } -} +# install_pkgs <- function(pkgs) { +# if (is_installed("pak")) { +# getExportedValue("pak", "pkg_install")(pkgs, ask = FALSE) +# } else { +# utils::install.packages(pkgs) +# } +# } pkg_nm <- function() utils::packageName(environment())