map_genes.sh

[zuodabin]

Dear authors,

I would like to inquire about the logic used in the map_genes.sh script for identifying homologous genes. Specifically, what is the underlying approach of this method, and how does it differ from the RBH (Reciprocal Best Hit) method?

[zuodabin]

Additionally, I would like to ask whether the homologous genes identified by map_genes.sh script are orthologues, paralogues, or both?