Hi,
I noticed that in the file BeagleCPUImpl.hpp, within the function int BeagleCPUImpl<BEAGLE_CPU_GENERIC>::updatePrePartials(...), the variable byPartition is hard-coded to false (line 1318 on the master branch).
bool byPartition = false;
Does this imply that the preorder partial likelihood calculation currently does not support partitioned data? If so, does this also mean that the HMC algorithm consequently does not support partitioned data either?
Thank you for your clarification!
Best,
Minghao