diff --git a/hs2p/configs/default.yaml b/hs2p/configs/default.yaml index aa1ca48..af09947 100644 --- a/hs2p/configs/default.yaml +++ b/hs2p/configs/default.yaml @@ -20,7 +20,7 @@ tiling: drop_holes: false # whether or not to drop tiles whose center pixel falls withing an identified holes use_padding: true # whether to pad the border of the slide seg_params: - downsample: 16 # find the closest downsample in the slide for tissue segmentation + downsample: 64 # find the closest downsample in the slide for tissue segmentation sthresh: 8 # segmentation threshold (positive integer, using a higher threshold leads to less foreground and more background detection) (not used when use_otsu=True) sthresh_up: 255 # upper threshold value for scaling the binary mask mthresh: 7 # median filter size (positive, odd integer)