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type:enhancementPropose enhancement to the lessonPropose enhancement to the lesson
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How could the content be improved?
See comment from @ggrimes on #316
The lesson could also be use to illustrate grep options such as case insensitivity -i
grep single SraRunTable.txt vs
grep -i single SraRunTable.txt and Whole-word match -w
grep ZDB16 SraRunTable.txtvs
grep -w ZDB16 SraRunTable.txtFor the Writing for loops section
It work up to the following loop that extract the sample name from the fastq files and then add them to a seprate file
for file in *.fastq; do
sample=$(basename $file .fastq)
grep "$sample" ../sra_metadata/SraRunTable.txt >> metadata.txt
doneWhich part of the content does your suggestion apply to?
Episode 4 - redirection
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type:enhancementPropose enhancement to the lessonPropose enhancement to the lesson