simulations/cluster.json at master · friendsofstrandseq/simulations · GitHub

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{
  "__default__" :
  {
    "sbatch" : "sbatch -o slurm/{rule}.%j.out -e slurm/{rule}.%j.out",
    "partition" : "htc",
    "n"      : "{threads}",
    "mem"    : "500M",
    "time"   : "10:00"
  },
  "new_evaluation_newer_version" :
  {
    "mem"   : "2G"
  },
  "new_evaluation_hackathon" :
  {
    "mem"   : "2G"
  },
  "simulate_counts" :
  {
    "mem"    : "1200M"
  },
  "new_simulate_counts" :
  {
    "mem"    : "1200M"
  },
  "plot_SV_calls_new" :
  {
    "time"   : "30:00"
  },
  "segmentation" :
  {
    "time"   : "30:00",
	"mem"    : "2G"
  },
  "sv_classifier_preparation" :
  {
    "mem"    : "2500M",
	"time"   : "12:00"
  },
  "plot_mosaic_counts" :
  {
    "time"   : "20:00"
  },
  "plot_SV_calls_new" :
  {
    "mem"    : "2G",
    "time"   : "25:00"
  },
  "plot_SV_calls_old" :
  {
    "time" : "35:00",
    "mem"  : "1G"
  },
  "sv_classifier_mostsimple" :
  {
    "time"   : "03:00"
  },
  "mosaiClassifier_calc_probs" :
  {
    "mem"    : "2G",
    "time"   : "30:00"
  },
  "mosaiClassifier_make_call" :
  {
    "time"   : "20:00"
  },
  "mosaiClassifier_make_call_biallelic" :
  {
    "time"   : "20:00"
  }
}