Skip to content

Freesurfer subregion segmentations #5

@sarvizargar

Description

@sarvizargar

Hi Rave Team!

Would you please let me know how can I generate an anatomical location report for electrodes that incorporates FreeSurfer subregion segmentation data on top of recon-all?

I have had segmented and added the following subregional files into subject's rave-imaging/fs/mri folder:

brainstemSsLabels.FSvoxelSpace.mgz
hypothalamic_subunits_seg.v1.mgz
rh.hippoAmygLabels.FSvoxelSpace.mgz
lh.hippoAmygLabels.FSvoxelSpace.mgz
ThalamicNuclei.FSvoxelSpace.mgz

Is there a way to add all the subregional information to the standard recon-all segmentation and provide a final location for each contact, or it is going to create separate report, using each subregion mgz file?

Thank you!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions