Consider JGI Dremio lakehouse for GOLD sample data

[turbomam]

Summary

GOLD metadata is now available through the JGI Dremio data lakehouse. This may be relevant for GOLD sample annotation workflows.

Current state

The repo includes GOLD examples (examples/gold.json) suggesting GOLD data is used.

Suggestion

Consider whether the Dremio lakehouse could serve as a data source for GOLD samples, potentially via linkml-store's Dremio adapter.

Benefits

• Direct SQL access to GOLD biosamples
• Pre-structured tables
• No API pagination limits

References

• linkml/linkml-store
• turbomam/jgi-dremio-exploration (minimal example)

[turbomam]

Note: The JGI Dremio data lakehouse contents and access methods are subject to change.

Also note this is distinct from the KBase/BERDIL data lakehouse, which also has support in linkml-store.