CopyKit_paper/README.Rmd at main · navinlabcode/CopyKit_paper · GitHub

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---
output: github_document
---

<!-- README.md is generated from README.Rmd. Please edit that file -->

```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
```

# CopyKit Paper

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This repository contains the scripts to reproduce the figures for the CopyKit manuscript.
**Resolving clonal substructure from single cell genomic data using CopyKit**

## Manuscript Code

Code to reproduce figures from the manuscript can be found here:
[https://navinlabcode.github.io/CopyKit_paper/](https://navinlabcode.github.io/CopyKit_paper/)


## CopyKit installation

You can install the development version of CopyKit from github with:

``` r
devtools::install_github("navinlabcode/copykit")
```

Please check CopyKit package GitHub repository as well:
[https://github.com/navinlabcode/copykit](https://github.com/navinlabcode/copykit)

## Documentation

CopyKit complete documentation can be found here:
[https://navinlabcode.github.io/CopyKit-UserGuide/](https://navinlabcode.github.io/CopyKit-UserGuide/)

## Datasets

Files used for this project are deposited to the sequence read archive (SRA) under BioProject PRJNA785341.