Test astk_interface.py not running with initialize_stand

[mlabadie]

Error:

~\Documents\GitHub\adel\src\alinea\adel\newmtg.py in mtg_factory(parameters, metamer_factory, leaf_sectors, leaves, stand, axis_dynamics, add_elongation, topology, split, aborting_tiller_reduction, leaf_db)
    530             args.update({'split': split})
    531
--> 532             if args.get('HS_final') < args.get('nff'):
    533                 for what in (
    534                 'Ll', 'Lv', 'Lr', 'Lsen', 'L_shape', 'Lw_shape', 'Gl', 'Gv',

TypeError: '>' not supported between instances of 'numpy.ndarray' and 'numpy.str_'

[pradal]

Can you provide a test?
Thanks

[pradal]

Here is a test (thks @HowcanoeWang): see issue #27

>>> from alinea.adel.astk_interface import AdelWheat
>>> from alinea.astk.Weather import sample_weather

>>> adel = AdelWheat(nsect=2)
>>> g = adel.setup_canopy(100)
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/hwang/miniconda3/envs/adel/lib/python3.9/site-packages/alinea.adel-1.9.0-py3.9.egg/alinea/adel/astk_interface.py", line 154, in setup_canopy
    g = self.build_mtg(canopy, stand,
  File "/home/hwang/miniconda3/envs/adel/lib/python3.9/site-packages/alinea.adel-1.9.0-py3.9.egg/alinea/adel/adel.py", line 226, in build_mtg
    g = mtg_factory(parameters, stand=stand, leaf_sectors=self.nsect,
  File "/home/hwang/miniconda3/envs/adel/lib/python3.9/site-packages/alinea.adel-1.9.0-py3.9.egg/alinea/adel/newmtg.py", line 532, in mtg_factory
    if args.get('HS_final') < args.get('nff'):
TypeError: '>' not supported between instances of 'numpy.ndarray' and 'numpy.str_'

[pradal]

@mlabadie : This works on my computer (Mac).
Can you test it on yours?

@HowcanoeWang: What is your operating system? Win, Mac, Linux?

[mlabadie]

@mlabadie : This works on my computer (Mac). Can you test it on yours?

@HowcanoeWang: What is your operating system? Win, Mac, Linux?

@pradal @HowcanoeWang
On my computer (Win) it works.

I tested using my pre-existing Conda environment and creating a new environment with the installation of alinea.adel from the Conda Openalea3 channel.

In [6]: from alinea.astk.Weather import sample_weather
In [7]: from alinea.adel.astk_interface import AdelWheat
In [8]: adel = AdelWheat(nsect=2)
In [9]: g = adel.setup_canopy(age=100)
In [10]: g.display()
MTG : nb_vertices=23, nb_scales=6
/plant1                 (id=1)
^/MS                    (id=2)
^/metamer1                      (id=3)
^/internode                     (id=4)
^/HiddenElement                 (id=5)
^<StemElement                   (id=6)
        +sheath                 (id=7)
        ^/HiddenElement                 (id=8)
        ^<StemElement                   (id=9)
        ^<blade                 (id=10)
        ^/HiddenElement                 (id=11)
        ^<LeafElement1                  (id=12)
        ^<LeafElement2                  (id=13)
^<metamer2                      (id=14)
^/internode                     (id=15)
^/HiddenElement                 (id=16)
^<StemElement                   (id=17)
        +sheath                 (id=18)
        ^/HiddenElement                 (id=19)
        ^<StemElement                   (id=20)
        ^<blade                 (id=21)
        ^/HiddenElement                 (id=22)

[pradal]

Yes. But it fails with

g = adel.setup_canopy(age=1000)

[pradal]

@christian34 Some warnings are introduce from rpy2

(Sorry in french)

R[write to console]: Messages d'avis :

R[write to console]: 1: NAs introduits lors de la conversion automatique 

R[write to console]: 2: NAs introduits lors de la conversion automatique 

R[write to console]: 3: 
R[write to console]: Dans regularize.values(x, y, ties, missing(ties), na.rm = na.rm) :
R[write to console]: 
 
R[write to console]:  collapsing to unique 'x' values

R[write to console]: 4: 
R[write to console]: Dans regularize.values(x, y, ties, missing(ties), na.rm = na.rm) :
R[write to console]: 
 
R[write to console]:  collapsing to unique 'x' values

R[write to console]: 5: 
R[write to console]: Dans regularize.values(x, y, ties, missing(ties), na.rm = na.rm) :
R[write to console]: 
 
R[write to console]:  collapsing to unique 'x' values

R[write to console]: 6: 
R[write to console]: Dans regularize.values(x, y, ties, missing(ties), na.rm = na.rm) :
R[write to console]: 
 
R[write to console]:  collapsing to unique 'x' values

[HowcanoeWang]

@mlabadie : This works on my computer (Mac). Can you test it on yours?

@HowcanoeWang: What is your operating system? Win, Mac, Linux?

Ubuntu in Windows Linux Subsystem.

=====

Emm, strange. It works today. And I could not reproduce the error.