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Description
The sample_name in PEPhub can be derived and modified in the config file.
Unfortunately, because of this, if sample_name does not exist in the sample table, modifying of the project becomes impossible.
An exception occurs when trying to retrieve the sample name from a sample table that was not initialized by peppy. The error is happening in pepdbagent.
Example pep:
pep_version: 2.1.0
sample_table: samples.csv
name: cm4ai_images
description: ''
sample_modifiers:
append:
sample_name: key
derive:
attributes:
- sample_name
sources:
key: '{Gene_Name}_{Treatment}'
csv file:
| AntibodyID | sample_name | ENSEMBLID | Gene_Name | Treatment | PlateID | Well |
|---|---|---|---|---|---|---|
| CAB005042 | 1 | ens123 | EIF5A | Paclitaxel | 3 | C2 |
| CAB005042 | 2 | ens124 | EIF5A | Vorinostat | 3 | C2 |
| CAB005042 | 3 | ens125 | EIF5A | untreated | 3 | C2 |
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