diff --git a/gui_tutorial.rst b/gui_tutorial.rst index a0ce322..609cc19 100644 --- a/gui_tutorial.rst +++ b/gui_tutorial.rst @@ -361,6 +361,9 @@ Region'. Now all of the 'Reference tissue' options will become available, but leave these as they are: we will accept the default option of using the CSF (in the ventricles) for calibration. +.. image:: images/calib_refregion.png + :alt: BASIL GUI Calibration + You could click 'Run' now and wait for the analysis to complete. But, in the interests of time we will save ourselves the bother of doing all of the registration all over again. Before @@ -370,10 +373,6 @@ clicking run, therefore, do: ``csfmask.nii.gz`` from the data directory. This is a ready prepared ventricular mask for this subject. (in fact it is precisely the mask you would get if you ran the analysis as setup above). - -.. image:: images/calib_refregion.png - :alt: BASIL GUI Calibration - - Go back to the 'Structure' tab and choose 'None' for 'Structural data from'. This will turn off all of the registration processes.