From a3da7b04332472f63e1308254c2b91d519bd14d1 Mon Sep 17 00:00:00 2001 From: Paul McCarthy Date: Wed, 27 Oct 2021 12:58:16 +0100 Subject: [PATCH] RF: Move image outside of list Image, and steps 2-3, were not being shown on rendered page --- gui_tutorial.rst | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/gui_tutorial.rst b/gui_tutorial.rst index a0ce322..609cc19 100644 --- a/gui_tutorial.rst +++ b/gui_tutorial.rst @@ -361,6 +361,9 @@ Region'. Now all of the 'Reference tissue' options will become available, but leave these as they are: we will accept the default option of using the CSF (in the ventricles) for calibration. +.. image:: images/calib_refregion.png + :alt: BASIL GUI Calibration + You could click 'Run' now and wait for the analysis to complete. But, in the interests of time we will save ourselves the bother of doing all of the registration all over again. Before @@ -370,10 +373,6 @@ clicking run, therefore, do: ``csfmask.nii.gz`` from the data directory. This is a ready prepared ventricular mask for this subject. (in fact it is precisely the mask you would get if you ran the analysis as setup above). - -.. image:: images/calib_refregion.png - :alt: BASIL GUI Calibration - - Go back to the 'Structure' tab and choose 'None' for 'Structural data from'. This will turn off all of the registration processes.