cannot compute exact p-value

[plesager]

I got this Warning message:

In ks.test(index_exp1, index_exp2) : cannot compute exact p-value with ties

How should it be interpreted? Can it be ignored or does the code need to deal with this warning? I did not spot anything spurious in the plots.

[plesager]

More generally I got warning that are not printed:

There were 13 warnings (use warnings() to see them)

should we worry about them? I am not familiar with R, so I am not quite sure what its philosophy is with numerical warnings.

[etiennesky]

warnings are not usually bad, but if you can run the commands in an interactive session try running warnings() just after running the command. Post the output here and we can check.

[fmassonn]

Hey, since it's Martin Ménégoz who coded this script, I will transfer the request to him directly and invite him to answer here.

[etiennesky]

or if you can't run interactively, try adding a warnings() statement just after the ks.test() statement.

[mmenegoz]

I think that we do not have to worry about these warnings. It just means that the computing of the p-value has been done with some simplifications, as explained there:

https://stats.stackexchange.com/questions/113032/ks-test-and-ks-boot-exact-p-values-and-ties

[plesager]

I added

options(warn=1)

in the code to get the warnings printed. I have only two kind of warnings, the first one already mentioned in the OP:

In ks.test(index_exp1, index_exp2) : cannot compute exact p-value with ties

which I understand we should not worry about, and the second one:

Warning: ! Warning: Parameter 'sizetit' is obsolete. Use 'title_scale' instead.

which is fixed in aa3a75b