diff --git a/docs/04-genomic-file-formats/02-FASTQ-files.md b/docs/04-genomic-file-formats/02-FASTQ-files.md index ed7d77a..257eaeb 100644 --- a/docs/04-genomic-file-formats/02-FASTQ-files.md +++ b/docs/04-genomic-file-formats/02-FASTQ-files.md @@ -34,7 +34,7 @@ by newlines. Random access within FASTQ files is not typical—generally, FASTQs are used solely as input to some alignment process, which then produces a BAM file—so they are gzipped (not bgzipped) to save space. Conventionally, FASTQ file names -indicate which read the files contains (e.g. Sample.fastq.gz for single-end +indicate which read the files contain (e.g. Sample.fastq.gz for single-end sequencing or Sample_R1.fastq.gz and Sample_R2.fastq.gz in paired-end sequencing where _R1 stands for "read one(s)" and _R2 stands for "read two(s)"). @@ -82,4 +82,4 @@ zcat Sample_R2.fastq.gz | head -n 7 | gzip -c > Sample_R2.bad.fastq.gz fq lint Sample_R1.fastq.gz Sample_R2.bad.fastq.gz # Sample_R2.bad.fastq.gz:8:1: [S004] CompleteValidator: Incomplete record: quality is empty -``` \ No newline at end of file +```