From 8f669195a514c417fb733001f5c87fc0e76f473b Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Wed, 21 Jan 2026 17:15:43 +0000 Subject: [PATCH 1/2] Initial plan From ba5492b49f332d6c98d06e0c7306a6702728f3f1 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Wed, 21 Jan 2026 17:19:07 +0000 Subject: [PATCH 2/2] Bump umap container revision to 11 for Python 3.14.2 upgrade Co-authored-by: adthrasher <1165729+adthrasher@users.noreply.github.com> --- docker/umap/package.json | 2 +- workflows/methylation/methylation-cohort.wdl | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/docker/umap/package.json b/docker/umap/package.json index fc6ab1a0d..71cfaf371 100644 --- a/docker/umap/package.json +++ b/docker/umap/package.json @@ -1,5 +1,5 @@ { "name": "umap", "version": "0.5.7", - "revision": "10" + "revision": "11" } \ No newline at end of file diff --git a/workflows/methylation/methylation-cohort.wdl b/workflows/methylation/methylation-cohort.wdl index e1bf70be5..a4e94aeae 100644 --- a/workflows/methylation/methylation-cohort.wdl +++ b/workflows/methylation/methylation-cohort.wdl @@ -285,7 +285,7 @@ task generate_umap { } runtime { - container: "ghcr.io/stjudecloud/umap:0.5.7-10" + container: "ghcr.io/stjudecloud/umap:0.5.7-11" memory: "8 GB" cpu: 1 disks: "~{disk_size_gb} GB"