About the output #6
Description
Dear,
This is the result I obtained using your software, and the command run is as follows: dng dnm auto --vcf {input} --ped {params.ped} --output_vcf {output}. The output results are all DNM? I want to know what the last two columns mean. I don't quite understand why the genotype of the child in the DNM_CONFIG column doesn't match the REF and ALT columns.
chr1 6784896 . T G 0 PASS RD_MOM=21;RD_DAD=30;MQ_MOM=-2147483648;MQ_DAD=-2147483648;SNPcode=1;code=6; NULL_CONFIG(child/mom/dad):PP_NULL:ML_NULL:DNM_CONFIG(child/mom/dad):PP_DN
M:ML_DNM:RD:MQ TT/TT/TT:0.999753:3.95324e-05:GT/TT/TT:0.000246769:9.9301e-09:26:-2147483648
chr1 6982586 . T G 0 PASS RD_MOM=18;RD_DAD=26;MQ_MOM=-2147483648;MQ_DAD=-2147483648;SNPcode=2;code=9; NULL_CONFIG(child/mom/dad):PP_NULL:ML_NULL:DNM_CONFIG(child/mom/dad):PP_DN
M:ML_DNM:RD:MQ GT/GT/TT:0.996186:2.388e-06:GT/TT/TT:0.00381449:9.9301e-09:29:-2147483648
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