I saw the discussion over here:
KhronosGroup/glTF#1699
Have you already added support for this or have plans to add support for custom attributes? To be able to store the original node index integer in a custom attribute to be able to do individual mesh picking and also fetch extras data from the consolidated meshes. I think it would be very useful for many people in the AEC/CAD/BIM industry, making these models alot more accessible in more tools.