Upgrade pre-commit hooks and enable isort rules

[dweindl]

Sort imports.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 76.48%. Comparing base (82f76cf) to head (c56a5ed).
⚠️ Report is 107 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #2983   +/-   ##
=======================================
  Coverage   76.48%   76.48%           
=======================================
  Files         307      307           
  Lines       20022    20022           
  Branches     1500     1500           
=======================================
  Hits        15314    15314           
  Misses       4695     4695           
  Partials       13       13           

Flag	Coverage Δ
cpp	71.98% <ø> (ø)
cpp_python	38.53% <ø> (+0.36%)	⬆️
petab	39.20% <ø> (ø)
python	69.56% <ø> (ø)
sbmlsuite-jax	34.63% <ø> (ø)

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Files with missing lines	Coverage Δ
python/sdist/amici/__init__.py	96.07% <ø> (ø)
python/sdist/amici/__main__.py	0.00% <ø> (ø)
python/sdist/amici/_codegen/cxx_functions.py	97.14% <ø> (ø)
python/sdist/amici/compile.py	68.42% <ø> (ø)
python/sdist/amici/custom_commands.py	0.00% <ø> (ø)
python/sdist/amici/cxxcodeprinter.py	95.57% <ø> (ø)
python/sdist/amici/de_export.py	96.88% <ø> (ø)
python/sdist/amici/de_model.py	92.76% <ø> (ø)
python/sdist/amici/de_model_components.py	93.02% <ø> (ø)
python/sdist/amici/debugging/__init__.py	78.57% <ø> (ø)
... and 29 more

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