maint: ruff, modernize

[dweindl]

• update ruff
• modernize & reformat

[codecov]

Codecov Report

❌ Patch coverage is 78.26087% with 10 lines in your changes missing coverage. Please review.
✅ Project coverage is 77.36%. Comparing base (b2699a8) to head (69c3654).
⚠️ Report is 3 commits behind head on main.

Files with missing lines	Patch %	Lines
python/sdist/amici/jax/petab.py	77.77%	8 Missing ⚠️
python/sdist/amici/jax/model.py	50.00%	1 Missing ⚠️
python/sdist/amici/sim/jax/__init__.py	80.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #3131      +/-   ##
==========================================
- Coverage   77.39%   77.36%   -0.03%     
==========================================
  Files         316      316              
  Lines       20632    20632              
  Branches     1483     1483              
==========================================
- Hits        15968    15962       -6     
- Misses       4656     4662       +6     
  Partials        8        8              

Flag	Coverage Δ
cpp	70.44% <15.21%> (-0.03%)	⬇️
cpp_python	37.87% <13.04%> (ø)
petab	47.16% <78.26%> (ø)
python	68.90% <15.21%> (-0.03%)	⬇️
sbmlsuite-jax	32.81% <15.21%> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
python/sdist/amici/_symbolic/de_model.py	91.68% <100.00%> (ø)
...ython/sdist/amici/_symbolic/de_model_components.py	93.25% <ø> (ø)
python/sdist/amici/constants.py	100.00% <100.00%> (ø)
...hon/sdist/amici/importers/petab/_petab_importer.py	86.74% <ø> (ø)
python/sdist/amici/importers/pysb/__init__.py	94.57% <ø> (ø)
python/sdist/amici/importers/sbml/__init__.py	94.26% <ø> (ø)
python/sdist/amici/importers/sbml/splines.py	80.62% <ø> (ø)
python/sdist/amici/importers/utils.py	85.90% <100.00%> (ø)
python/sdist/amici/jax/_simulation.py	94.44% <ø> (ø)
python/sdist/amici/jax/ode_export.py	88.05% <ø> (ø)
... and 3 more

... and 2 files with indirect coverage changes

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.