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Update pytree filtering to inexact array #3143

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Merged
BSnelling merged 1 commit into from
Mar 2, 2026
Merged

Update pytree filtering to inexact array #3143

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2 changes: 1 addition & 1 deletion doc/examples/example_jax_petab/ExampleJaxPEtab.ipynb
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Expand Up @@ -465,7 +465,7 @@
"# initialise adam\n",
"optim = adam(0.01)\n",
"# eqx.partition is necessary here to only initialize the optimizer for array variables\n",
"param, static = eqx.partition(jax_problem, eqx.is_array)\n",
"param, static = eqx.partition(jax_problem, eqx.is_inexact_array)\n",
"opt_state = optim.init(param)\n",
"\n",
"\n",
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2 changes: 1 addition & 1 deletion doc/rtd_requirements.txt
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Expand Up @@ -9,7 +9,7 @@ setuptools>=67.7.2
git+https://github.com/jmuhlich/pysb@22d69a350b472f33d85ba64ffb10b190483c1c98
# For forward type definition in generate_equinox
matplotlib>=3.7.1
optax==0.2.6
optax
nbsphinx
nbformat
myst-parser
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2 changes: 1 addition & 1 deletion scripts/installAmiciSource.sh
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Expand Up @@ -39,7 +39,7 @@ python -m pip install --upgrade pip wheel
python -m pip install --upgrade pip setuptools cmake_build_extension==0.6.0 numpy petab swig
python -m pip install git+https://github.com/pysb/pysb@master # for SPM with compartments
python -m pip install git+https://github.com/patrick-kidger/diffrax@main # for events with direction
python -m pip install 'optax<0.2.7' # for jax petab notebook
python -m pip install optax # for jax petab notebook
AMICI_BUILD_TEMP="${AMICI_PATH}/python/sdist/build/temp" \
python -m pip install --verbose -e "${AMICI_PATH}/python/sdist[petab,test,vis,jax]" --no-build-isolation
deactivate
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