update_antipsychotic_equivalences

[Momo1502]

Hi Dheshan,

Sorry for cancelling the last pull request, I still had to add additional antipsychotics first.
I have (i) updated the constants.py file to incorporate a new constant for the conversion of antipsychotics to haloperidol 1 mg equivalences based on the Leucht table provided by Scott Woods and (ii) updated the formsdb/runners/compute/compute_medication_effects.py file to calculate the equivalences based on the constants.
Please let me know if another script also uses the constants / calculated values so that I can update them as well.

Best,
Moritz

[dheshanm]

Hi Moritz,

Other scripts that use the outputs from this script are:

• runners/compute/compute_medication_effects_by_class.py

The scripts run in the following order:

1. compute_medication.py - Imports the medication data. (Already feature complete)
2. compute_medication_effects.py - This has already beed addgressed by this PR
3. compute_medication_effects_by_class.py - This 'flattens' the Dataframe from table two for each participant's by 'med_class'. i.e., we get only 1 row per (subject, timepoint, event, med_class)

Please let me know if you can modify this script as well as part of this PR, if not I can work on this too!

Thanks,
Dheshan

[Momo1502]

Hi Dheshan,

thanks for your feedback! I went through the compute_medication_effects_by_class.py script as well and implemented the relevant changes. This hopefully addresses all relevant scripts that use the equivalent doses.

Best,
Moritz