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Bug reports and compatibility issues (level_hierarchy, NA handling, BUSCO installation)

Status: Open.

#70 In AlexanderLabWHOI/EUKulele;

· Hocnonsense opened on Oct 7, 2025

Extension not recognized properly with --n_ext

Status: Open.

#69 In AlexanderLabWHOI/EUKulele;

· franlat opened on Mar 7, 2025

URI::Escape is missing in its perl installation inside Eukulele container

Status: Open.

#67 In AlexanderLabWHOI/EUKulele;

· luciazifcakova opened on Nov 1, 2024

Run against Eukrprot database did not complete successfully and Eukprot update request

Status: Open.

#66 In AlexanderLabWHOI/EUKulele;

· mkarlik93 opened on Jul 12, 2024

Improve DB download option

Status: Open.

#65 In AlexanderLabWHOI/EUKulele;

· paulzierep opened on Jun 27, 2024

Suppress opening of matplotlib figure opening

Status: Open.

#64 In AlexanderLabWHOI/EUKulele;

· paulzierep opened on Jun 10, 2024

Combining multiple samples

Status: Open.

#61 In AlexanderLabWHOI/EUKulele;

· susheelbhanu opened on Feb 19, 2024

some runs fail when downloading gtdb and marmmetsp

Status: Open.

#58 In AlexanderLabWHOI/EUKulele;

· danilodileo opened on Dec 11, 2023

Print db version

Status: Open.

#57 In AlexanderLabWHOI/EUKulele;

· danilodileo opened on Oct 19, 2023

Using multiple databases in the same run

Status: Open.

#53 In AlexanderLabWHOI/EUKulele;

· susheelbhanu opened on Sep 25, 2023

Taxonomy estimation step fails with eukprot

Status: Open.

#51 In AlexanderLabWHOI/EUKulele;

· cnatalie opened on Mar 6, 2023

Busco issue

Status: Open.

#49 In AlexanderLabWHOI/EUKulele;

· qfaber opened on Jan 17, 2023