Adding initial intfire test #65
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Latest master
* 'master' of github.com:AllenInstitute/sonata: updating 9_cells example updating config file and adding magic to spikes h5 adding node-sets fixing positions column to match SONATA standard fixing example files adding point neuron example
Now the apical dendrites are pointing up the Y axes.
* 'master' of github.com:AllenInstitute/sonata: Rotate cells only around Y-axis in the 300 cell example for better appearance Morphologies reoriented and recentered Adding missing network field in 5 and 9 cell simulation_config.json samples Fixing spike files in 300_intfire example Fixing spike sorting attribute to be "by_time" and not "time" Minor edit in reporting Remove Python module with pre-final reporting code
First version of sim test suite
… or "PyNN" (AllenInstitute#33) Removing table 2 about dynamics_param overrides. This table has becomes confusing if we add non NEURON specific information for point_neuron models. It also doesn't add anything that is not already said above. Removed the sentence about how NEURON interpret single sample point somas. It could be confusing and it doesn't add information as the area of a sphere and the revolution surface of a cylinder inscribing the sphere are equal. Editing.
…date Updating pysonata code
Fixing so that all examples use model_name instead of pop_name
updating setup.py
* 'master' of github.com:AllenInstitute/sonata: updating setup metadata for pypi Fixing so that all examples use model_name instead of pop_name Updating pysonata code Specify how to represent node types when `target_simulator` is "NEST" or "PyNN" (AllenInstitute#33)
* 'master' of github.com:AllenInstitute/sonata: updating setup metadata for pypi Fixing so that all examples use model_name instead of pop_name Updating pysonata code Specify how to represent node types when `target_simulator` is "NEST" or "PyNN" (AllenInstitute#33)
This change mainly affects the spec for reports and node sets. Some datasets have been renamed to use plural for consistency.
…urons Adding 300 NEST example
Feature/layer4
Fixed a discovered issue with L4 positions and rotations. Cleaned up …
Merge master
* master: Fixed a discovered issue with L4 positions and rotations. Cleaned up the code a bit Adding small layer4 example with ~ 450 cells adding small V1 L4 example Minor formatting fixes
Changes needed to run 300_pointneurons example with PyNN
Changes needed to run 300_pointneurons example with PyNN
Merge pull request AllenInstitute#95 from apdavison/300_pointneurons
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Closing as most of my updates here should get incorporated with #100 |
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