GitHub · Where software is built

Labels Milestones New issue

[BUG] Example configs use user-specific absolute paths

#581

· fmerinocasallo opened

on Feb 20, 2026

[BUG] Docker container (v.5.5.4) lacks dependencies

#579

· huangnengCSU opened

on Feb 3, 2026

[BUG] IsoAnnotLite shows no transcripts were annotated despite running on provided ref gff3

#575

· leewqa opened

on Feb 2, 2026

[ENHANCEMENT] diff_to_TSS calculated based on genomic coordinates

#570

· ancofer3 opened

on Jan 27, 2026

[BUG] Error during the TUSCO report generation stage

#565

· alihamraoui opened

on Jan 13, 2026

[BUG] Error 'The 'gene_name' tag was not found in the input GTF file.' even though gene_name is in GTF file

#509

· joelnitta opened

on Aug 2, 2025

[BUG] Macaca fascicularis sqanti_qc.py error

#501

· sfodel opened

on Jul 23, 2025

[BUG] IsoAnnotLite assigns transcript ID as protein ID

#500

· FabianJetzinger opened

on Jul 15, 2025

[BUG] Error using IsoAnnotLite with gencode gff3

#461

· VandaLovejoy opened

on May 9, 2025

[BUG] RTS Switching false negative

#441

· Youpu-Chen opened

on Apr 7, 2025

Having output of examples check into git is problematic

#276

· diekhans opened

on Mar 24, 2024

Dockerfile for SQANTI3/5.1.2

#227

· skchronicles opened

on Sep 14, 2023