feat(bio): add the core dna files

[razvantirboaca]

[🌕] <☀️> 🥨

🌬️ whisper: "keep the code of life close to the hearth."

[github-actions]

Thanks for the PR! CI will build a preview image. Deployment is disabled by default for privacy. 🔒

[github-actions]

Build preview ✅

Docker image (not pushed on PRs): ghcr.io/gratiaos/m3/m3-memory-server:sha-4ef9b45

To test locally after checkout:

# Build
docker build -t ghcr.io/gratiaos/m3/m3-memory-server:sha-4ef9b45 -f server/Dockerfile .

# Run (example)
docker run --rm -p 3033:3033 \
  -e M3_BIND=0.0.0.0:3033 \
  -e M3_WEBHOOK_URL=$M3_WEBHOOK_URL \
  -e M3_WEBHOOK_SECRET=$M3_WEBHOOK_SECRET \
  ghcr.io/gratiaos/m3/m3-memory-server:sha-4ef9b45

[Copilot]

Pull request overview

This PR adds a new philosophical/metaphorical documentation file written primarily in Romanian that maps biological DNA concepts to the project's organizational structure. The document uses the "ATCG" nucleotide metaphor to represent project values (Atenție, Trust, Curaj, Grijă) and references directory structures as "chromosomes."

Changes:

• Adds dosare/README_BIOLOGY.md with metaphorical documentation connecting biology concepts to project structure

---

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[Copilot]

References to "Proiect Trifoi", "Ciudad de los Gatos", "LUCA (Vypress Chat 2008)", and other context-specific terms are introduced without explanation. These terms do not appear elsewhere in the codebase. If this document is intended to be accessible to contributors or future maintainers, consider either adding a brief explanation of these terms or linking to external documentation that provides context.

Suggested change

	**Origine:** LUCA (Vypress Chat 2008) ⚓
	**Context:** Proiect Trifoi / Ciudad de los Gatos
	**Origine:** LUCA (Vypress Chat 2008) ⚓ — primul nucleu de conversație al proiectului, pornit pe rețeaua internă de chat.
	**Context:** Proiect Trifoi — inițiativa internă de arhivare și continuitate a „Hello!”-ului original / Ciudad de los Gatos — spațiul comunității hibride (online + offline) în care trăiește acest proiect.

[Copilot]

This document is marked as "Confidențial / Miez Protejat" (Confidential / Protected Core), which seems contradictory for a file committed to a public repository. If this is truly confidential, it should not be in version control. If it's meant to be philosophical/metaphorical rather than literally confidential, consider clarifying the status to avoid confusion about the nature of this content.

Suggested change

	**Statut:** Confidențial / Miez Protejat 🛡️
	**Statut (metaforic):** „Miez Protejat” – document public, non-confidențial 🛡️

[Copilot]

The directory /joint does not exist in the repository. Additionally, /covenant appears to be a reference to the COVENANT.md file at the root level, not a directory. Consider updating these references to match the actual repository structure, or create the missing directories if they are intended to be part of this change.

Suggested change

	* **Cromozomii noștri:** `/joint`, `/dosare`, `/covenant`.
	* **Cromozomii noștri:** `joint`, `/dosare`, `COVENANT.md`.

[Copilot]

This document does not follow the project's established convention of ending with a whisper line. Nearly all documentation files in this repository end with a whisper in the format 🌬 whisper: _"poetic message"_ or 🌬️ whisper: _"poetic message"_. For consistency with files like COVENANT.md (line 55), Whisper.md, AGENTS.md (line 109), and numerous other docs, consider adding an appropriate whisper line at the end.

[github-actions]

Build preview ✅

Docker image (not pushed on PRs): ghcr.io/gratiaos/m3/m3-memory-server:sha-b652aa1

To test locally after checkout:

# Build
docker build -t ghcr.io/gratiaos/m3/m3-memory-server:sha-b652aa1 -f server/Dockerfile .

# Run (example)
docker run --rm -p 3033:3033 \
  -e M3_BIND=0.0.0.0:3033 \
  -e M3_WEBHOOK_URL=$M3_WEBHOOK_URL \
  -e M3_WEBHOOK_SECRET=$M3_WEBHOOK_SECRET \
  ghcr.io/gratiaos/m3/m3-memory-server:sha-b652aa1

[github-actions]

Build preview ✅

Docker image (not pushed on PRs): ghcr.io/gratiaos/m3/m3-memory-server:sha-55dbc81

To test locally after checkout:

# Build
docker build -t ghcr.io/gratiaos/m3/m3-memory-server:sha-55dbc81 -f server/Dockerfile .

# Run (example)
docker run --rm -p 3033:3033 \
  -e M3_BIND=0.0.0.0:3033 \
  -e M3_WEBHOOK_URL=$M3_WEBHOOK_URL \
  -e M3_WEBHOOK_SECRET=$M3_WEBHOOK_SECRET \
  ghcr.io/gratiaos/m3/m3-memory-server:sha-55dbc81

[Copilot]

Pull request overview

Copilot reviewed 2 out of 2 changed files in this pull request and generated 2 comments.

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[Copilot]

This refactoring from sort_by to sort_by_key is correct and more idiomatic, but it doesn't appear to be related to the PR title "feat(bio): add the core dna files" or description about biology/DNA. Consider whether this change should be in a separate PR focused on code improvements, or update the PR description to explain why this refactoring is included.

[Copilot]

This document references three directories: /joint, /dosare, and /covenant as "our chromosomes". However, only /dosare currently exists in the repository. The /joint directory doesn't exist, and /covenant likely refers to the COVENANT.md file (not a directory). Consider either creating these directories as part of this PR if they're meant to exist, or clarifying in the documentation whether these are planned future structures or symbolic references.

Suggested change

	* **Cromozomii noștri:** `/joint`, `/dosare`, `/covenant`.
	* **Cromozomii noștri (structuri conceptuale):** `/joint` (planificat), `/dosare` (director existent), `COVENANT.md` (fișier, referit metaforic drept `/covenant`).