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Status: Open.

#212 In ImmuneDynamics/Spectre;

· OnikoLiani opened on Nov 5, 2025

The <code>size</code> argument of <code>element_rect()</code> is deprecated as of ggplot2 3.4.0.

Status: Open.

#211 In ImmuneDynamics/Spectre;

· sxa190065 opened on Oct 21, 2025

Revisit some packages in suggest

troubleshootingTroubleshooting an issue, that doesn't appear to be a fundamental error in the code.Troubleshooting an issue, that doesn't appear to be a fundamental error in the code.

Status: Open.

#209 In ImmuneDynamics/Spectre;

· ghar1821 opened on Sep 16, 2025

Link expired

Status: Open.

#206 In ImmuneDynamics/Spectre;

· betgou opened on May 1, 2025

Cytonorm doesn't work when specifying different cellular and clustering parameters

Status: Open.

#204 In ImmuneDynamics/Spectre;

· hrj21 opened on Feb 18, 2025

Trouble Accessing Spectre Workflow Guides

Status: Open.

#201 In ImmuneDynamics/Spectre;

· nolanvale opened on Oct 30, 2024

Error processing large IMC dataset in advanced analysis - 1. Add Masks

Status: Open.

#198 In ImmuneDynamics/Spectre;

· RoryCostell opened on Oct 1, 2024

Unbiased Marker Selection for Clusters

enhancementNew feature or requestNew feature or request

Status: Open.

#196 In ImmuneDynamics/Spectre;

· Palomapvb opened on Sep 3, 2024

Area analysis on Data.table not working in Spectre 1.2.0

Status: Open.

#195 In ImmuneDynamics/Spectre;

· RoryCostell opened on Aug 30, 2024

Advice for automated cell classification workflow between datasets with different number of parameters

Status: Open.

#188 In ImmuneDynamics/Spectre;

· denvercal1234GitHub opened on Apr 26, 2024

How to identify/visualize co-expression (correlation) between markers?

Status: Open.

#182 In ImmuneDynamics/Spectre;

· WilliamMWei opened on Dec 20, 2023

No appropriate meta clustring with run.flowsom

Status: Open.

#154 In ImmuneDynamics/Spectre;

· Tenrolf opened on Apr 5, 2023