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Kpmp 6545 biopsy tracking tableau #162

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Merged
zwright merged 3 commits into from
Feb 4, 2026
Merged

Kpmp 6545 biopsy tracking tableau #162

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a5eb85f
KPMP-6545: remove unused results
zwright Feb 3, 2026
d84acc4
KPMP-6545: add tis
zwright Feb 4, 2026
2e48864
KPMP-6545: forgot format string
zwright Feb 4, 2026
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8 changes: 7 additions & 1 deletion data_management/services/tableau.py
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Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,12 @@ def truncate_biopsy_tracking(self):
)
return result

def truncate_biopsy_tracking_long(self):
result = self.db_tableau.get_data(
"truncate table biopsy_tracking_long"
)
return result

def truncate_data_manager_data(self):
result = self.db_tableau.get_data(
"truncate table data_manager_data"
Expand All @@ -34,7 +40,7 @@ def load_biopsy_tracking(self):
def load_biopsy_tracking_long(self):
self.truncate_biopsy_tracking_long()
bt_results = self.dlu_management.get_biopsy_tracking_long()
query = "INSERT INTO biopsy_tracking_long(redcap_id, specimen_id, dlu_packageType, status) VALUES(%s, %s, %s, %s)"
query = "INSERT INTO biopsy_tracking_long(redcap_id, specimen_id, dlu_tis, dlu_packageType, status) VALUES(%s, %s, %s, %s, %s)"
records_modified = 0
for result in bt_results:
self.db_tableau.insert_data(query, tuple(result.values()))
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1 change: 1 addition & 0 deletions data_management/sql/biopsy_tracking_long.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@ CREATE TABLE biopsy_tracking_long
(
redcap_id varchar(100) NULL,
specimen_id varchar(100) NULL,
dlu_tis varchar(100) NULL,
dlu_packageType varchar(100) NULL,
status varchar(100) NULL
) ENGINE=InnoDB
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