Unpadding sequences #56
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This PR adds sequence unpadding and repadding with flash attention 2 varlen for the attention and flash attention rope. Inside of the model,
attention_maskis created and sequences are unpadded before passing to decoder layers. After all the decoder layers and final norm, the unpadded sequences are padded again before passing tolm_head. We repad for the loss function calculation. In the future, we can get rid of repadding and do loss calculation ourselves as_unpad_modernbert_inputalso returns unpadded labels.Results for sdpa (green) vs. FA2 (red) on wandb: https://wandb.ai/local-research-group/smollm2-135m-training-avelina/workspace?nw=nwusergalopyz. Grey one uses FA2 with batch size of 8 instead of 4. Because there are no padding tokens, I could fit 8bs inside of RTX 3090. (24GB RAM)