Add docs

.readthedocs.yaml

@@ -0,0 +1,28 @@
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Set the OS, Python version, and other tools you might need
+build:
+  os: ubuntu-24.04
+  tools:
+    python: "miniforge3-latest"
+
+# Build documentation in the "docs/" directory with Sphinx
+sphinx:
+  builder: html
+  configuration: docs/source/conf.py
+  fail_on_warning: true
+
+# Don't build any extra output files
+formats: []
+
+python:
+  install:
+    - method: pip
+      path: .
+
+conda:
+  environment: docs/environment.yml

README.md

@@ -1,14 +1,19 @@
 # sectionate
 A package to sample grid-consistent sections from ocean model outputs
 
-[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/raphaeldussin/sectionate/master)
+(Currently only supports structured grids.)
+
+[![PyPI](https://badge.fury.io/py/sectionate.svg)](https://badge.fury.io/py/sectionate)
+[![Conda Version](https://img.shields.io/conda/vn/conda-forge/sectionate)](https://anaconda.org/conda-forge/sectionate)
+[![Docs](https://readthedocs.org/projects/sectionate/badge/?version=latest)](https://sectionate.readthedocs.io/en/latest/)
+[![License](https://img.shields.io/github/license/MOM6-Community/sectionate)](https://github.com/MOM6-Community/sectionate)
 
 Quick Start Guide
 -----------------
 
 **For users: minimal installation within an existing environment**
 ```bash
-pip install sectionate
+conda install sectionate
 ```
 
 **For developers: installing dependencies from scratch using `conda`**

ci/environment.yml

@@ -1,6 +1,7 @@
 name: test_env_sectionate
 channels:
   - conda-forge
+  - nodefaults
 dependencies:
   - python>=3.12
   - pytest

conda/meta.yaml

@@ -0,0 +1,49 @@
+{% set name = "sectionate" %}
+{% set version = "0.3.3" %}
+{% set python_min = "3.11" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.org/packages/source/s/sectionate/sectionate-{{ version }}.tar.gz
+  sha256: b855b091e0c5ac56ab09ec96822ad46ee2ec89bf3b6b3aecb53cbe16dbc36ecb
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+
+requirements:
+  host:
+    - python {{ python_min }}
+    - pip
+    - hatchling
+  run:
+    - python >={{ python_min }}
+    - dask
+    - numba
+    - numpy
+    - scipy
+    - xarray
+    - xgcm >=0.9.0
+
+test:
+  requires:
+    - python {{ python_min }}
+    - pip
+  imports:
+    - sectionate
+  commands:
+    - pip check
+
+about:
+  home: https://github.com/MOM6-community/sectionate
+  summary: A package to sample grid-consistent sections from ocean model outputs
+  license: GPL-3.0-only
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - hdrake

docs/Makefile

@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = source
+BUILDDIR      = build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

docs/environment.yml

@@ -11,3 +11,7 @@ dependencies:
   - netcdf4
   - pydap
   - pytest
+  - sphinx
+  - nbsphinx
+  - ipykernel
+  - pip

docs/make.bat

@@ -0,0 +1,35 @@
+@ECHO OFF
+
+pushd %~dp0
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+	set SPHINXBUILD=sphinx-build
+)
+set SOURCEDIR=source
+set BUILDDIR=build
+
+%SPHINXBUILD% >NUL 2>NUL
+if errorlevel 9009 (
+	echo.
+	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
+	echo.installed, then set the SPHINXBUILD environment variable to point
+	echo.to the full path of the 'sphinx-build' executable. Alternatively you
+	echo.may add the Sphinx directory to PATH.
+	echo.
+	echo.If you don't have Sphinx installed, grab it from
+	echo.https://www.sphinx-doc.org/
+	exit /b 1
+)
+
+if "%1" == "" goto help
+
+%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+goto end
+
+:help
+%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+
+:end
+popd

docs/source/_static/custom.css

@@ -0,0 +1,39 @@
+/* Responsive layout widening for Alabaster
+   - On small screens: use full width (with padding)
+   - On typical laptops: ~1100–1250px content area
+   - On big screens: cap so lines don't get absurdly long
+*/
+
+div.document {
+  /* Total doc block width (sidebar + content) */
+  width: min(96vw, 1400px);
+  margin: 0 auto;
+}
+
+/* Keep the main content comfortable: cap line length */
+div.body {
+  /* body width within the document area */
+  max-width: 900px;
+}
+
+/* Give the sidebar a stable width; let it wrap below on small screens */
+div.sphinxsidebar {
+  width: 270px;
+}
+
+/* On narrower screens, don't force sidebar + body side-by-side */
+@media (max-width: 900px) {
+  div.document {
+    width: 96vw;
+  }
+  div.sphinxsidebar {
+    float: none;
+    width: auto;
+  }
+  div.bodywrapper {
+    margin: 0;
+  }
+  div.body {
+    max-width: none;
+  }
+}

docs/source/conf.py

@@ -0,0 +1,78 @@
+# Configuration file for the Sphinx documentation builder.
+#
+# For the full list of built-in configuration values, see the documentation:
+# https://www.sphinx-doc.org/en/master/usage/configuration.html
+
+from importlib.metadata import version as get_version
+from pathlib import Path
+import shutil
+
+# The master toctree document.
+master_doc = "index"
+
+# -- Project information -----------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
+
+
+project = 'sectionate'
+copyright = '2026, Henri Drake'
+author = 'Henri Drake'
+
+release = get_version(project)
+version = ".".join(release.split(".")[:2])
+
+# -- General configuration ---------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
+
+extensions = [
+    "nbsphinx"
+]
+
+templates_path = ['_templates']
+exclude_patterns = []
+
+# Don't execute notebooks on RTD unless you want that
+nbsphinx_execute = "never"
+
+# -- Copy notebooks from repo root/examples into docs/source/examples --------
+
+HERE = Path(__file__).resolve()
+DOCS_SOURCE = HERE.parent                       # docs/source
+REPO_ROOT = HERE.parents[2]                     # up two levels from conf.py
+EXAMPLES_SRC = REPO_ROOT / "examples"
+EXAMPLES_DST = DOCS_SOURCE / "examples"
+
+def _sync_examples():
+    if not EXAMPLES_SRC.exists():
+        return
+
+    # fresh copy so removed notebooks don't linger
+    if EXAMPLES_DST.exists():
+        shutil.rmtree(EXAMPLES_DST)
+    EXAMPLES_DST.mkdir(parents=True, exist_ok=True)
+
+    for nb in EXAMPLES_SRC.rglob("*.ipynb"):
+        rel = nb.relative_to(EXAMPLES_SRC)
+        out = EXAMPLES_DST / rel
+        out.parent.mkdir(parents=True, exist_ok=True)
+        shutil.copy2(nb, out)
+
+_sync_examples()
+
+# -- Options for HTML output -------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
+
+html_title = f"{project} v{version} documentation"
+
+html_theme = "alabaster"
+
+html_theme_options = {
+    "sidebar_width": "270px",
+}
+
+html_static_path = ["_static"]
+html_css_files = ["custom.css"]
+
+latex_documents = [
+    ("index")
+]

docs/source/index.rst

@@ -0,0 +1,13 @@
+sectionate: a package to sample grid-consistent sections from structured ocean model outputs
+=============================================================================================
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
+   installation
+   examples/1_creating_an_OSNAP_section
+   examples/2_OSNAP_transports_CM4p25
+   examples/3_Labrador_convergence_CM4p25
+   examples/4_sections_on_global_tripolar_grid
+   examples/5_MOC_transports_CM4p25

docs/source/installation.rst

@@ -0,0 +1,44 @@
+Installation
+------------
+
+Requirements
+^^^^^^^^^^^^
+
+sectionate is compatible with python 3 (>= version 3.11). It requires xgcm
+(>= version 0.9.0).
+
+Installation from Conda Forge
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+The easiest way to install sectionate along with its dependencies is via conda
+forge::
+
+    conda install -c conda-forge sectionate
+
+
+Installation from Pip
+^^^^^^^^^^^^^^^^^^^^^
+
+An alternative is to use pip::
+
+    pip install sectionate
+
+This will install the latest release from
+`pypi <https://pypi.python.org/pypi>`_.
+
+Installation from GitHub
+^^^^^^^^^^^^^^^^^^^^^^^^
+
+sectionate is under active development. To obtain the latest development version,
+you may clone the `source repository <https://github.com/MOM6-Community/sectionate>`_
+and install it using pip::
+
+    pip install git+https://github.com/MOM6-Community/sectionate.git
+
+More comprehensive instructions for installing a development environment can be found in the Contributor Guide (coming soon).
+
+Users are encouraged to `fork <https://help.github.com/articles/fork-a-repo/>`_
+sectionate and submit issues_ and `pull requests`_.
+
+.. _issues: https://github.com/MOM6-Community/sectionate/issues
+.. _`pull requests`: https://github.com/MOM6-Community/sectionate/pulls