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Access query update 20250204 #34

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Merged
MatthewMallory merged 2 commits into from
Feb 4, 2025
Merged

Access query update 20250204 #34

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e8150c3
add project codes
sarahwallingbell Feb 4, 2025
6e36be0
thalamus query update
sarahwallingbell Feb 4, 2025
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48 changes: 24 additions & 24 deletions morph_utils/access_query.py
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Original file line number Diff line number Diff line change
Expand Up @@ -184,6 +184,7 @@ def get_mouse_passing(db_file):
WHERE
(
Project LIKE 'mIVSCC-MET' OR
Project LIKE 'mIVSCC-MET-%' OR
Project LIKE 'T301%'
) AND
(
Expand Down Expand Up @@ -398,37 +399,36 @@ def get_mouse_thalamus_passing(db_file):
mouse_wholebrain_supertype
FROM IVSCCTrackingDatabaseProduction
WHERE
(
Project LIKE 'mIVSCC-MET' OR
Project LIKE 'T301%'
) AND
(
[Cell Overall State] NOT LIKE 'Deferred' AND
[Cell Overall State] NOT LIKE 'To be%' AND
[Cell Overall State] NOT LIKE 'QC' AND
[Cell Overall State] NOT LIKE 'Failed%' AND
[Cell Overall State] NOT LIKE 'Rescan%'
) AND
[Cell Overall State] NOT LIKE 'Rescan%' AND
(
[Pinned Structure and Layer] IN (
'TH', 'DORsm', 'VENT', 'VAL', 'VM', 'VP', '', 'PoT',
'SPF', 'SPFm', 'SPFp', 'SPA', 'PP', 'GENd', 'LAT',
'LP', 'PO', 'POL', 'SGN', 'Eth', 'REth', 'ATN', 'AV',
'AD', 'IAM', 'IAD', 'LD', 'MED', 'IMD', 'SMT', 'PR',
'MTN', 'PVT', 'PT', 'RE', 'Xi', 'ILM', 'RH', 'CM',
'PCN', 'CL', 'PF', 'PIL', 'RT', 'GENv', 'IGL', 'IntG',
'SubG', 'EPI', 'MH', 'LH', 'PIN'
)
OR
[Pinned Structure and Layer] LIKE 'VPL%' OR
[Pinned Structure and Layer] LIKE 'VPM%' OR
[Pinned Structure and Layer] LIKE 'MG%' OR
[Pinned Structure and Layer] LIKE 'LGd%' OR
[Pinned Structure and Layer] LIKE 'AM%' OR
[Pinned Structure and Layer] LIKE 'MD%' OR
[Pinned Structure and Layer] LIKE 'LGv%'
((Project LIKE 'mIVSCC-MET' OR Project LIKE 'T301%') AND
(
[Pinned Structure and Layer] IN (
'TH', 'DORsm', 'VENT', 'VAL', 'VM', 'VP', '', 'PoT',
'SPF', 'SPFm', 'SPFp', 'SPA', 'PP', 'GENd', 'LAT',
'LP', 'PO', 'POL', 'SGN', 'Eth', 'REth', 'ATN', 'AV',
'AD', 'IAM', 'IAD', 'LD', 'MED', 'IMD', 'SMT', 'PR',
'MTN', 'PVT', 'PT', 'RE', 'Xi', 'ILM', 'RH', 'CM',
'PCN', 'CL', 'PF', 'PIL', 'RT', 'GENv', 'IGL', 'IntG',
'SubG', 'EPI', 'MH', 'LH', 'PIN') OR
[Pinned Structure and Layer] LIKE 'VPL%' OR
[Pinned Structure and Layer] LIKE 'VPM%' OR
[Pinned Structure and Layer] LIKE 'MG%' OR
[Pinned Structure and Layer] LIKE 'LGd%' OR
[Pinned Structure and Layer] LIKE 'AM%' OR
[Pinned Structure and Layer] LIKE 'MD%' OR
[Pinned Structure and Layer] LIKE 'LGv%'
)
) OR
Project = 'mIVSCC-MET-U19_AIBS'
);
"""


result = query_access(db_file, query)
return result

Expand Down