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MichelaMarini/README.md

Hi there 👋

I'm Michela — a PhD candidate in Applied Mathematics at the University of Houston.
I build machine learning pipelines for single-cell image analysis, feature quantification, and phenotypic profiling.

🔍 My research focuses on the quantitative analysis of biological data, with an emphasis on developing computational pipelines for high-throughput microscopy-based imaging. I integrate mathematical modeling, statistical methods, and machine learning to help extract meaningful insights from complex, image-based datasets.

🧠 I’ve worked at the intersection of applied mathematics, AI, and biomedical research — contributing to projects in cancer biology and neuroscience, and collaborating closely with interdisciplinary teams.

📌 Recent work:

  • SPACe: open-source tool for analyzing Cell Painting data using AI-based segmentation and Earth Mover’s Distance
  • Astrocyte morphology quantification: extracting structural features from brain tissue images using cytoskeletal markers and a Morphological Distance metric
  • AIS classification: applying Fourier analysis and machine learning to study structural changes in neurons

📄 Google Scholar

📫 Reach me on: LinkedInEmail

🛠 Skills

Languages & Packages: Python • PyTorch • TensorFlow • Keras • Jupyter Notebook • R • MATLAB
Cluster Computing: HPC • SLURM
Cloud Platforms: AWS • Google Cloud
Scripting & OS: Unix • Shell scripting • Git • Windows

Pinned Loading

  1. dlabate/SPACe dlabate/SPACe Public

    Swift Phenotypic Analysis of Cells

    Jupyter Notebook 10 5

  2. Morphological-analysis-of-astrocytes Morphological-analysis-of-astrocytes Public

    Python 6