Modularity

Scripts

• rnd_net.py - Generate random networks of given number of nodes and edges with an embedded motif.

• rmv_dup.py - Checks for duplicates in the random networks generated and removes them if found. Generates a log file with the duplicate networks.

• bmc_cor,py - Reads the data created by RACIPE and calculates the bimodality coefficent and correlation coeffiencent between the motifs nodes, writes the values into csv files.

• racipe_run.py - Creates directories and for each topology file generated by rnd_net.py and simulates each topo file three times, analyses the data using bmc_cor.py and to create csv file of the compiled data of all the 100 netwokrks.

Folders

IntroData

Contains data and plot codes for Isolated TS and TT motifs.

TS_Plots

Contains data and plot codes for TS embedded in random networks.

TT_Plots

Contains data and plot codes for TT embedded in random networks.