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1. cellpose cellpose Public

   a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

   Python 2k 561

2. Kilosort Kilosort Public

   Fast spike sorting with drift correction

   Python 579 276

3. suite2p suite2p Public

   cell detection in calcium imaging recordings

   Jupyter Notebook 417 267

4. rastermap rastermap Public

   a visualization method for neural data

   Python 240 54

5. facemap facemap Public

   Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

   Python 181 70

6. minimodel minimodel Public

   minimodels!

   Jupyter Notebook 3 3